PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G017600.1.p
Common NameGLYMA_20G017600, LOC100788830
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 338aa    MW: 37939 Da    PI: 7.5876
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G017600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-2177137257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++t+ ql +Leel+++ +++psae+++++A++l    +++ ++V++WFqN++a+e++
  Glyma.20G017600.1.p  77 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 137
                          68*****************99**************************************97 PP
2Wus_type_Homeobox112.12.9e-3676139265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
  Glyma.20G017600.1.p  76 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 139
                          789***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-957137IPR009057Homeodomain-like
PROSITE profilePS5007112.43873138IPR001356Homeobox domain
SMARTSM003895.9E-775142IPR001356Homeobox domain
SuperFamilySSF466892.48E-1278140IPR009057Homeodomain-like
PfamPF000464.1E-1978137IPR001356Homeobox domain
CDDcd000865.18E-678133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDSFGSTFH SSTPNSTLNS HAPPKITTFC SIAQPYCICT HCNHILTFNH HVGNVAEEGT  60
NSTGSHNNNL QSQQQQSTRW SPTPVQLLVL EELYRQGTKT PSAEQIQQIA SQLRQFGKIE  120
GKNVFYWFQN HKARERQKRR RREMEENNNN NISASSSGEG LKETGCGVKE TKKWASTSNC  180
SGHAEDSAAL DIAEKGSNGW TQFEGKDSIQ VLMRRNIAEK QAKLQEIMEM PCFPPVTMEA  240
STPTTSHRRT THYNTQLLTP QNYNNLPSSV INRESLNYYG GEENAAPRTL DLFPHKRDDQ  300
HGISLAERKS SMFCASASMD TEVTSNNQFF EFLPLRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G017600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150345e-85AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605496.10.0WUSCHEL-related homeobox 1
TrEMBLK7N0S90.0K7N0S9_SOYBN; Uncharacterized protein
STRINGGLYMA20G02161.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151541012
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-29WOX family protein