PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G260900.2.p
Common NameGLYMA_19G260900, LOC780540
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 750aa    MW: 82008.2 Da    PI: 5.8664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G260900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-162468147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Glyma.19G260900.2.p 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-171874IPR009057Homeodomain-like
PROSITE profilePS5129420.1731973IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-82171IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-172271IPR006447Myb domain, plants
SMARTSM007171.1E-122371IPR001005SANT/Myb domain
PfamPF002493.1E-132467IPR001005SANT/Myb domain
CDDcd001671.44E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDADSSGEEV LIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEAFVKG VPIGQALDID IPPPRPKRKP NNPYPRKTNV GGAPTLHSGA  120
RHGKPLISIV SSLGKQALGL EKEPLPEKHD VDLRPSTVKE NKDQSCSKVF TILQEAPCSS  180
VSSANKNSTS ILVPLRNSCA LRKFIPSVKD VITQDETNDS FVTDDLENQK LEIDDGKHTQ  240
KSNGTCKVSK SENSGASELV QTEKTDGLNC ALTIEGVQGN QNYPRHVPVH VVDGNLGTST  300
QNPSPDMVFQ DSIFQPKGGV NGQPNLVTIS ATSNISESQN NTARSSIHQS FPPCPTFTQD  360
DYHSFLQVSS TFSSLIVSTL LQNPAAHAAA SFAATFWPYA NAETSADSPM CTPDFPSRQI  420
GSPPSVTAIA AATVAAATAW WAAHGLLPLC APLHTAFACP PASAIAVPLM NIDESPQKTE  480
QEEIKPQNSS LQDQILDPEH SEAQHSAPKS PAVFSSKSEE RGDANLNTSP KATNHETNQV  540
ISENPDSNKM KGRKPVDRSS CGSNTTSSSE ETELLLKDEK EKEEPKTPDA NILDTELSNR  600
RSRSINNLTD SWKEVSEEGR LAFQALFSRE VLPQSFSPTH DLINEDNQID SIKDNDQNTD  660
YKDEDLESKK CSSNCDGVQK NLLFVKDNNE EEGLLIIGLG PGKLKTRPTG FKPYKRCSVE  720
ANENRIGTAC NQGEEKGPKR IRLNGEAST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.301950.0flower| hypocotyl| leaf| meristem| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G260900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0764340.0EU076434.1 Glycine max late elongated hypocotyl and circadian clock associated-1-like protein 2 (LCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345918.10.0protein LHY
RefseqXP_014627305.10.0protein LHY isoform X3
TrEMBLI1NCR90.0I1NCR9_SOYBN; R2R3-type MYB transcription factor MYB156
STRINGGLYMA19G45030.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.19e-80circadian clock associated 1