PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G217800.1.p
Common NameGLYMA_19G217800, LOC100816452
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 291aa    MW: 32562.2 Da    PI: 7.6295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G217800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.33.6e-34155212259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H+h+
  Glyma.19G217800.1.p 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHP 212
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381306.3E-1151290IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.806.3E-35139214IPR003657WRKY domain
SuperFamilySSF1182901.57E-29146214IPR003657WRKY domain
PROSITE profilePS5081131.892149214IPR003657WRKY domain
SMARTSM007748.7E-41154213IPR003657WRKY domain
PfamPF031061.6E-26155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENNKMMGVK KEDYAANIGS SSLPSCNNYP FFDFSEDKGS LGFMELLGVQ DYNHLLDFPL  60
SSHVSVPQTS AVKEPPETKK ECSEVTNNQQ PTTPNSSSIS SASSEVLYDE QNKTVDLAPE  120
HQKTKEQLKA KKTNQKRQRE PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC  180
TSVSCNVKKR VERSFSDPSI VVTTYEGQHT HPSPVMGRSN NFGTVMSGSA GNYMSQYYHQ  240
QQVHVNALSS LGFLSSSSSS RNATFSQETA LLSDYGLLQD VVPSHMLKED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28144215778Probable WRKY transcription factor 4
2lex_A4e-28144215778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.165470.0cotyledon| epicotyl| hypocotyl| leaf| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G217800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312300.0KT031230.1 Glycine max clone HN_CCL_159 WRKY transcription factor (Glyma03g37940.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554557.10.0WRKY transcription factor 23
RefseqXP_028218150.10.0WRKY transcription factor 23-like
SwissprotO229006e-63WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A445FJV90.0A0A445FJV9_GLYSO; WRKY transcription factor
TrEMBLI1NBE00.0I1NBE0_SOYBN; WRKY transcription factor
STRINGGLYMA19G40560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-60WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]