PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G216700.1.p

Common Name

GLYMA_19G216700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 575aa MW: 65538.2 Da PI: 6.0589

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G216700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.3	2.6e-82	196	564	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsP 89 + Ll++Ae v +++e+a+ lL + + ++ +++p+qR++++f++AL++r+++++ ++ + + ++++++ ++ alk + P Glyma.19G216700.1.p 196 AQFLLAAAERVGCQQFERANGLLLHCEWSSNASANPVQRVIFHFARALRERIYKETGRMTVKGSGKNEERELlqKMDTNIALKC-HLKVP 284 678**************************************************665555444444444333333333333344.4457 PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 + ++ ++t qaI+e v+ e+++H iD++i G+Q+ aL+qaLa+R+ + l+iT++g ++ k+++eetg+rLa+fAe+l++pf++ Glyma.19G216700.1.p 285 FNQVMQFTGIQAIVEHVACETKIHLIDLEIRSGVQYTALMQALAERRdRIVQLLKITAIGLSS--LKTMIEETGKRLASFAESLNLPFSY 372 ******************************************999455679****55..99******************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +++ ++++++++ +++++ ++Ea+aV + + l ++++++ ++e+ +++++++++P +++v e ea+hns+sF++rf+eal +ysa f Glyma.19G216700.1.p 373 KTVFVTDIAEIREDHFEIGEDEAVAVYSPYFLRSMVSRPDCMEN----LMRVIRNIKPVIMIVLEVEANHNSPSFVNRFIEALFFYSAYF 458 *******************************988888888....************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 d+le+ + +e e r+++E++ l++ i+++va+eg+er+ r+ + Wr+ + + + + +se+ a+l+ + ++ ++ ++e++ ++ Glyma.19G216700.1.p 459 DCLETCIKHEIECRMTIEAV-LSEGIRDIVAMEGRERTVRNVKIDVWRRFFARYRMVETGFSESSLYHAHLVAKGFSfGKFCTIEKNGKC 547 ***************9.****************************************************888789*** PP GRAS 358 lvlgWkdrpLvsvSaWr 374 l+ gWk+ p+ s+SaWr Glyma.19G216700.1.p 548 LIVGWKGTPMHSISAWR 564 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.738	169	543	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-80	196	564	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MEIDQFSSTD LNFKGTQMGY GSTQEDVFQG KESLSGMELL GEIDPLPAEN GKGVKLFKYQ 60 DQKQLQEPKA DNLMLEEVNF DPDETEGLMK HGVASTEPVE YNKQVAPTPS LASLELLRNY 120 GSRFKRLSEQ NISTLSNIET SFDRQKMSTE EIIRVAGARY IQYSAHWNDS FYIPMHPYGL 180 DLGGLSEEEN RDIELAQFLL AAAERVGCQQ FERANGLLLH CEWSSNASAN PVQRVIFHFA 240 RALRERIYKE TGRMTVKGSG KNEERELLQK MDTNIALKCH LKVPFNQVMQ FTGIQAIVEH 300 VACETKIHLI DLEIRSGVQY TALMQALAER RDRIVQLLKI TAIGLSSLKT MIEETGKRLA 360 SFAESLNLPF SYKTVFVTDI AEIREDHFEI GEDEAVAVYS PYFLRSMVSR PDCMENLMRV 420 IRNIKPVIMI VLEVEANHNS PSFVNRFIEA LFFYSAYFDC LETCIKHEIE CRMTIEAVLS 480 EGIRDIVAME GRERTVRNVK IDVWRRFFAR YRMVETGFSE SSLYHAHLVA KGFSFGKFCT 540 IEKNGKCLIV GWKGTPMHSI SAWRPILILF PKLV*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MEIDQFSSTD LNFKGTQMGY GSTQEDVFQG KESLSGMELL GEIDPLPAEN GKGVKLFKYQ  60
DQKQLQEPKA DNLMLEEVNF DPDETEGLMK HGVASTEPVE YNKQVAPTPS LASLELLRNY  120
GSRFKRLSEQ NISTLSNIET SFDRQKMSTE EIIRVAGARY IQYSAHWNDS FYIPMHPYGL  180
DLGGLSEEEN RDIELAQFLL AAAERVGCQQ FERANGLLLH CEWSSNASAN PVQRVIFHFA  240
RALRERIYKE TGRMTVKGSG KNEERELLQK MDTNIALKCH LKVPFNQVMQ FTGIQAIVEH  300
VACETKIHLI DLEIRSGVQY TALMQALAER RDRIVQLLKI TAIGLSSLKT MIEETGKRLA  360
SFAESLNLPF SYKTVFVTDI AEIREDHFEI GEDEAVAVYS PYFLRSMVSR PDCMENLMRV  420
IRNIKPVIMI VLEVEANHNS PSFVNRFIEA LFFYSAYFDC LETCIKHEIE CRMTIEAVLS  480
EGIRDIVAME GRERTVRNVK IDVWRRFFAR YRMVETGFSE SSLYHAHLVA KGFSFGKFCT  540
IEKNGKCLIV GWKGTPMHSI SAWRPILILF PKLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-33	203	565	27	380	Protein SCARECROW
5b3h_A	2e-33	203	565	26	379	Protein SCARECROW
5b3h_D	2e-33	203	565	26	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G216700.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028217963.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A0R0F2C2	0.0	A0A0R0F2C2_SOYBN; Uncharacterized protein
STRING	GLYMA19G40440.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162
Representative plant	OGRP2520	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-51	RGA-like 1

Link Out ? help Back to Top
Phytozome	Glyma.19G216700.1.p