PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G178200.1.p
Common NameGLYMA_19G178200, LOC100797238
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 495aa    MW: 54330.3 Da    PI: 8.0195
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-16159208155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.19G178200.1.p 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHVAARAYDRAAIKFRG 208
                          78*******************......55************************997 PP
2AP241.92.6e-13251301155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Glyma.19G178200.1.p 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAIKCNG 301
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-8159208IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-15159218IPR016177DNA-binding domain
SMARTSM003802.7E-32160222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-16160217IPR001471AP2/ERF domain
PROSITE profilePS5103217.477160216IPR001471AP2/ERF domain
CDDcd000182.43E-23160218No hitNo description
SuperFamilySSF541711.31E-16251310IPR016177DNA-binding domain
CDDcd000181.36E-24251311No hitNo description
PfamPF008476.6E-9251301IPR001471AP2/ERF domain
SMARTSM003801.6E-31252315IPR001471AP2/ERF domain
PROSITE profilePS5103215.606252309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15252309IPR001471AP2/ERF domain
PRINTSPR003675.4E-6253264IPR001471AP2/ERF domain
PRINTSPR003675.4E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MALRRLRRNL ALSIPRRQSP EGDLFNGAST KQTHAAMLDL NLNADSASDL QMESSGSFNS  60
SVVNAADTDD SCSYGDAVAY NFAILNNAAT SDGLPLGAAG EPSVRTIQLF PAADSGASAA  120
AWLDFSSKVD QHGAPPEQRI TPRQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHVAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQMSNF TKEEFVHILR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSELEAAR AYDKAAIKCN  300
GREAVTNFEP SLYEGEVISQ SDNEDTKQSL DLNLGIAPPS YSDGQIKNTP SNGSGMIAPQ  360
SWDDIPLDKR VMFEHSGSRS RTIQPPHHGF SIASGQHPSV WNGSNFFPIY EETAIEKRME  420
AAPVPNWAWQ VQGPYGRATL APPFSTAASS GFPSTIIPSA ADTQIRFPNM TFLHSHFPSS  480
ITNSGTISPF FFGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.528490.0flower| hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-98AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554357.20.0floral homeotic protein APETALA 2 isoform X1
RefseqXP_028216400.10.0APETALA2-like protein 3 isoform X1
SwissprotB8AMA91e-104AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A445FI120.0A0A445FI12_GLYSO; Floral homeotic protein APETALA 2 isoform A
TrEMBLK7MYY20.0K7MYY2_SOYBN; Uncharacterized protein
STRINGGLYMA19G36200.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-109related to AP2.7