PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G160900.1.p
Common NameGLYMA_19G160900, LOC100797789
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 293aa    MW: 31264.5 Da    PI: 6.3716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G160900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10141185554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Glyma.19G160900.1.p 141 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 185
                          99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-15138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANNPSDAPA DDFLEQILGL PNFASADSGL SAADVGLAGA ATQAPMMLQL NSADANAHLA  60
GAAFHAPVYQ LGLSLDQGKG GFMKPEEASA SGKRFRDDVV DNRAKNVFHG QPMPTTMPAA  120
PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIVD  180
YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGG EGARNRPAWD KWSNDGTERQ  240
VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYQSQPPDT SSIVKPETNP PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.612820.0hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G160900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554277.10.0transcription factor UNE12
RefseqXP_028218401.10.0transcription factor UNE12-like
SwissprotO227681e-135UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A445FHB10.0A0A445FHB1_GLYSO; Transcription factor UNE12
TrEMBLI1N9L80.0I1N9L8_SOYBN; Uncharacterized protein
STRINGGLYMA19G34360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]