PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G139100.1.p
Common NameGLYMA_19G139100, LOC102663358
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 659aa    MW: 75766.9 Da    PI: 6.7069
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G139100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.36.5e-1061134289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +Y +YA+++GF + +++skk  r+g+++   +vCs   +++  +             +  C a+++++++kdg++++++  l H+Hel
  Glyma.19G139100.1.p  61 YYTKYANQMGFGIMTRTSKKG-RDGKVKYLILVCSGITRSDAAR-------------KQYCAARINLTLRKDGTYRINSATLGHSHEL 134
                          8*************9999887.8888********8655444433.............569***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-661134IPR004330FAR1 DNA binding domain
PfamPF105512.5E-27236330IPR018289MULE transposase domain
PROSITE profilePS5096610.348520558IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-6532555IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MGELCHSRAP LDINSSGSEE NLVSISPEEI KLEPISFDGN DACPVPRPGM VFSSEAEARL  60
YYTKYANQMG FGIMTRTSKK GRDGKVKYLI LVCSGITRSD AARKQYCAAR INLTLRKDGT  120
YRINSATLGH SHELGSHHLL SSDIDTRGKR TLDQEVVDMG VKRISDKNEC RYYLQKERHL  180
IGENGDGEAL QKYLVRMQEQ DRNFFYVIDL DDFFCVRNVF WADGKSRAAY ESFGDVVIVD  240
TTCLSNRYKV PLVTFVGVNH HGQSVLFGCG LLSYEDSESF AWLFQSLLHC MSDVPPQGII  300
TDHCCKTMQK AVETVYPSTR HRWCLSNIME KLPQLIHGYA NYKSLRDHLQ NVVYDTPTIS  360
EFEQKWKKIV EDFDLKDNKW LKELFLERHR WAPSFVRGEF WAGMSINPHN ESMHAFFDGY  420
VSRLTTLKQF VDQYDNALQY KAEKEYVADI HSSSNSQACV TKSPIERQFQ AAYTHAKFLE  480
VQHEFVGKAD CNVSVASDDG SIFHYNVIED GIIDDKPKES VVEVIYNRVD CDVKCSCHLF  540
EFRGILCRHS LAVLSQERVK EVPCKYILDR WRKNIRRKYA YIKTSYGVQH FEPHVQRLEL  600
LCNQFNSIAA VAAEFEDTSS FVKDNLCNLK EKLEAWTTLL RNSSQVDVEK CNYMMDWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G139100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604361.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_028217084.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445FG720.0A0A445FG72_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A
TrEMBLK7MYC00.0K7MYC0_SOYBN; Uncharacterized protein
STRINGGLYMA19G32051.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-96FAR1-related sequence 6