PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G126800.1.p
Common NameGLYMA_19G126800, LOC100127362
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 785aa    MW: 85312.5 Da    PI: 6.1249
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G126800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.5e-13267328263
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++ kr  r+++NRe+A+ sRqRKk ++eeLeekv +L +   ++ ++++    e a+l+++v
  Glyma.19G126800.1.p 267 EDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSLNSIIADMSSKMSYVVAENATLRQQV 328
                          6789***********************************99999999998888888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-12266330IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.185268331IPR004827Basic-leucine zipper domain
PfamPF001701.4E-11269328IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-10270328No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-15270328No hitNo description
CDDcd147041.04E-19271322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MLQITNETPK ISKTISQKPS PMTASMPAVE PSPEPPASDL VFGDFSSNFN AFLIPSMDSL  60
FNTTDALPFA SDLEFGMDFD NNGEFEITFD DLDELDDIFI PSDAEDFLLP DVCNSNYDSA  120
SPPIDAKNSD SPDSDVSAVS GEGDSADNVR VSSVPSPEAE FCDREESSNG PVSSQGSGNG  180
GSGVYEAMHS PSPDSGPYER DITSSHAHAV TNNGVKMEET PAFDLKRKKE SCDGSATKHR  240
RFSSSVENNN NNTEKQSQSG LNGIDDEDEK RKARLMRNRE SAQLSRQRKK HYVEELEEKV  300
RSLNSIIADM SSKMSYVVAE NATLRQQVGA AGVMCPPPPA PAPGMYPHHP PMAPMPYPWM  360
PCAPYVVKPQ GSQVPLVPIP RLKPQQPASA PKGKKSENKK SEGKTTKVAS ISLLGLFFFI  420
MLFGGLVPLV DFRFGGLVEN VPGTGRSNYV SDRVYGQGGG KVWSLNGRRN GSERDEDVGF  480
SNGGRFSVSD RVNYERGRNF REERHDRRKG SDDFGRQGNA SEPLVASLYV PRNDKMVKID  540
GNLIIHSIMA SEKAMASQTA EAKKDKRETG LAIPKDLDSA LAIPGVGRSR GQHPHVYSVS  600
PEQRKALGSG STKVLKDHMK SSVTDGKMQQ WFREGLVGPM LSSGMCTEVF QFDVSPSPGA  660
IVPATSVANV STENRQNATS VKKTRNRRTL HELPEPLNGS SLNITEERVK NLQKDHLHGN  720
KSSMVVSVLV DPKEAGDGDV DVDGMMRPKS LSRIFVVVLI DSVKYVTYSC GLPRASPHLV  780
TGYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1674687RQNATSVKKTRNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.371520.0seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G126800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554104.20.0bZIP transcription factor 17
TrEMBLK7MY320.0K7MY32_SOYBN; Uncharacterized protein
STRINGGLYMA19G30681.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74873448
Representative plantOGRP21711628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-137bZIP family protein
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]