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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Glyma.19G122700.1.p | ||||||||
| Common Name | GLYMA_19G122700 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | G2-like | ||||||||
| Protein Properties | Length: 273aa MW: 29628.1 Da PI: 7.9666 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 105.8 | 2.5e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
Glyma.19G122700.1.p 46 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 11.884 | 43 | 103 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.8E-32 | 44 | 101 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.4E-17 | 45 | 100 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.3E-26 | 46 | 101 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.4E-7 | 48 | 99 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 9.5E-25 | 134 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 273 aa Download sequence Send to blast |
MYHTKKFSPA SMVPHKSQGG AEQLANAGVL GGSAVKTAAP SGGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD GKDPKDEKRM 120 SGDSISGADS SSGMPINDAL RMQMEVQKRL HEQLEVQKQL QMRIEAQGKY LQKIIEEQQK 180 LGSTLTTSET LPLSHDKQNH PQSEASGSSD ALASTVSPLK KQRIDDGSKE GFTASQVRKN 240 DNVGQLDPNL YDDAGFGFDL ETKKDEDNES GQ* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-23 | 45 | 103 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Gma.13728 | 0.0 | cotyledon| leaf| root| somatic embryo | ||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.19G122700.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HQ007311 | 0.0 | HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001276140.2 | 0.0 | MYB-CC domain-containing transcription factor PHR30 | ||||
| Refseq | XP_006604294.1 | 0.0 | MYB-CC domain-containing transcription factor PHR30 isoform X1 | ||||
| Refseq | XP_028218691.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_028218692.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
| Swissprot | Q9SJW0 | 2e-71 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A445FFF9 | 0.0 | A0A445FFF9_GLYSO; Myb family transcription factor PHL7 isoform B | ||||
| TrEMBL | I1N8J6 | 0.0 | I1N8J6_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA19G30220.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13013 | 23 | 30 | Representative plant | OGRP78 | 17 | 262 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 1e-63 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.19G122700.1.p |
| Entrez Gene | 100783132 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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