PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G118400.1.p
Common NameGLYMA_19G118400, LOC100791266
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 281aa    MW: 30294.9 Da    PI: 7.7029
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G118400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.43.3e-152787257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         r+R+t+++eq+ +Le+ F++   +p ++e  ++ + l     + +++V++WFqNrR + ++
  Glyma.19G118400.1.p 27 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRRLLekfgAVGDANVFYWFQNRRSRSRR 87
                         89*****************99*****************99******************997 PP
2Wus_type_Homeobox1071.1e-342689265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Glyma.19G118400.1.p 26 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRRLLEKFGAVGDANVFYWFQNRRSRSRRRQ 89
                         589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-132294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-92396IPR009057Homeodomain-like
PROSITE profilePS5007111.3372388IPR001356Homeobox domain
SMARTSM003892.8E-62592IPR001356Homeobox domain
PfamPF000465.6E-132787IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDQGQQQQQ QEAKSPRQGT ERSEAVRSRW TPKPEQILIL ESIFNSGMVN PPKDETVRIR  60
RLLEKFGAVG DANVFYWFQN RRSRSRRRQR QMMQQAAAAA AATTIDHPQA QAQTLVGGAI  120
PLDHTTQGNL VVASSATSTM GFGCSSSPSY AFLGSSSSSC GGGVIGGHQQ GMEGFFSVSS  180
QMGFPDHHTS PASSAFYPPL DPNLTYQAGY GGTNISGFIT VFLNGIATEL PKGPIDLKTV  240
FGEDVMLVHS SGVPVPTNEF GFLMQNLRHG ESYFLVSKPT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.298760.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G118400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-82AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553354.10.0WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J32e-69WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLK7MXY80.0K7MXY8_SOYBN; Uncharacterized protein
STRINGGLYMA19G29660.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Representative plantOGRP46971222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-61WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]