PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G037900.1.p | ||||||||
Common Name | GLYMA_19G037900, LOC100791105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 221aa MW: 25698.4 Da PI: 6.5804 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.4 | 2e-15 | 94 | 152 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN++L ++l++ ++ +++ +e+ Glyma.19G037900.1.p 94 RKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDQVMQEN 152 578*********************************************99999888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-14 | 90 | 154 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.806 | 92 | 155 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.76E-13 | 94 | 144 | No hit | No description |
Pfam | PF00170 | 3.7E-13 | 94 | 152 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.9E-12 | 94 | 166 | No hit | No description |
CDD | cd14702 | 3.36E-18 | 95 | 146 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 97 | 112 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MQSREVVSGL NYLLPSNPCP YPPNNNNYTT MFQNNINPTF QFQRFSNQIY GYNNINNTPY 60 HKVPDLFSPQ SSCISSNSTS DEADEQNLSL INERKHRRMI SNRESARRSR MRKQKHLDEL 120 WSQVVWLRNE NHQLMDKLNH VSESHDQVMQ ENAQLKEQAL ELRQMIRDMQ IHSPCPSSFI 180 TPLEDHHHDV DHVIPSAYLR SDSSNQLSNS CNNNMDDLLG * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 106 | 113 | RRSRMRKQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G037900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235881 | 0.0 | AC235881.2 Glycine max clone GM_WBc0011H22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555028.1 | 1e-162 | basic leucine zipper 43 | ||||
Refseq | XP_028217321.1 | 1e-162 | basic leucine zipper 43-like | ||||
TrEMBL | A0A0B2REI4 | 1e-161 | A0A0B2REI4_GLYSO; Basic leucine zipper 43 | ||||
TrEMBL | I1N6I0 | 1e-161 | I1N6I0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G05050.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 | Representative plant | OGRP3104 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30530.1 | 2e-52 | basic leucine-zipper 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G037900.1.p |
Entrez Gene | 100791105 |