PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G034600.1.p | ||||||||
Common Name | GLYMA_19G034600, LOC100820188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27959.1 Da PI: 9.7748 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.9 | 4.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f +gkl+eyss Glyma.19G034600.1.p 9 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 59 78***********************************************96 PP | |||||||
2 | K-box | 94.9 | 1.3e-31 | 84 | 173 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ + +++ + kL ++e L+r++R+++GedL++L+l+eLq+Le+qLe+++k+iR++Kn+++ e+i++lqkk ++lqe+n L+kk++e Glyma.19G034600.1.p 84 DESQGNWSLQCFKLTGKVEVLERNLRNFVGEDLDPLNLRELQSLEHQLETAIKRIRTRKNQVMNESISDLQKKARQLQEQNGILTKKIKE 173 56678999*******************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.21E-37 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 7.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-26 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.1 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE 60 SSMENVLERY ERHTHIGKLV GDGDESQGNW SLQCFKLTGK VEVLERNLRN FVGEDLDPLN 120 LRELQSLEHQ LETAIKRIRT RKNQVMNESI SDLQKKARQL QEQNGILTKK IKEKGKEVVE 180 RPHCGPETLG LTCPPELQRQ QRVFPSLTLC ETLQAGHLEE VVEARTVPTA STHIPPWMLH 240 PFTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24433 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G034600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006603929.1 | 1e-180 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_028217750.1 | 1e-180 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 2e-81 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A0R0EIM6 | 1e-179 | A0A0R0EIM6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445FBT8 | 1e-179 | A0A445FBT8_GLYSO; Agamous-like MADS-box protein AGL8-like | ||||
STRING | GLYMA13G06811.1 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 5e-74 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G034600.1.p |
Entrez Gene | 100820188 |
Publications ? help Back to Top | |||
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