PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G024500.1.p | ||||||||
Common Name | GLYMA_19G024500, LOC100785620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 41382.2 Da PI: 6.668 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 21 | 147 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL +kv ++ + + ++i e+d++k+ePwdLp ++k +ekewyfF+ rd+ky+tg+r+nrat +gyWkatgkd+ Glyma.19G024500.1.p 21 LPPGFRFHPTDEELITHYLSQKVLDSCFCA-RAIGEADLNKCEPWDLPCMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDR 109 79************************9888.89***************8888899*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ ++l+g+kktLvfykgrap+gek++Wvmheyrle Glyma.19G024500.1.p 110 EIYK-AKTLIGMKKTLVFYKGRAPSGEKSNWVMHEYRLE 147 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-63 | 17 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.648 | 21 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-30 | 22 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MQAMENNNYQ REIMEEQRFE LPPGFRFHPT DEELITHYLS QKVLDSCFCA RAIGEADLNK 60 CEPWDLPCMA KMGEKEWYFF CVRDRKYPTG QRTNRATGAG YWKATGKDRE IYKAKTLIGM 120 KKTLVFYKGR APSGEKSNWV MHEYRLENEH SVQNPPKKAM NDWAICRIFQ KSNCGKKMPI 180 SRLLRFSTFA KDIPSLMDSS PNNNNNSESK PVLGESSHAT CFSDPNQSED KKTENENIAE 240 SYEIIMLASS YSSNPSDVSP DSWTFSKSAP TVSHQSLQVG NSHCSDYFML HQEQSMLGML 300 IENHGSSTGQ RTQKAQDNNK DFDADMSSVM YNNNEMFQRS FGNQEYSSPS VGHVYSSGLW 360 GF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-55 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 18 | 177 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 18 | 177 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.895 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G024500.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-98 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554895.2 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_028217622.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 1e-110 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | I1N666 | 0.0 | I1N666_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G02850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-107 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G024500.1.p |
Entrez Gene | 100785620 |
Publications ? help Back to Top | |||
---|---|---|---|
|