PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G277100.1.p
Common NameGLYMA_18G277100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 196aa    MW: 22454.1 Da    PI: 6.3014
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G277100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.58.1e-1584132553
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                          ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ +
  Glyma.18G277100.1.p  84 RKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVS 132
                          578***************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-1380144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.38182145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-1284156No hitNo description
PfamPF001701.7E-1284131IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-1384132No hitNo description
CDDcd147029.41E-1985132No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQAREITGLN YLLPSDPCPY PGHYSMVQNT IPTFQLHKLS NQFYGLQNPP KVLADFSPPQ  60
SSCISSNSTS DEADEQQQSL INERKHRRMI SNRESARRSR MRKQKHLDEL WSQVVWLRNE  120
NHQLMDKLNH VSASQDKVVQ ENVQLREEAS ELRQMICDMQ LHSPYHPPPL SPIDDDVSPY  180
VKSDSSITDS LDLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G277100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920860.0BT092086.1 Soybean clone JCVI-FLGm-10E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235016.21e-143bZIP transcription factor bZIP73A
RefseqXP_028213242.11e-143basic leucine zipper 43-like
SwissprotQ9FMC21e-43BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A445FYJ41e-142A0A445FYJ4_GLYSO; Basic leucine zipper 43
TrEMBLI1N4U01e-142I1N4U0_SOYBN; Uncharacterized protein
STRINGGLYMA18G51250.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-43basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]