PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G261300.2.p
Common NameGLYMA_18G261300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 365aa    MW: 41156.2 Da    PI: 5.3239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G261300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-53191451129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrFhPtdeel+++yL+kkv ++ + +  +i evd++k+ePwdLp  +k +e+ewyfF+ rd+k +tg r+nrat+ gyWkatgkdk
  Glyma.18G261300.2.p  19 LPAGFRFHPTDEELINQYLTKKVVDNCFCA-IAIGEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKFPTGIRTNRATDIGYWKATGKDK 107
                          799***********************9888.78***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e++  +++l+g+kktLvfykgrapkgekt+Wvmheyrle
  Glyma.18G261300.2.p 108 EIIM-ENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 145
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-6116166IPR003441NAC domain
PROSITE profilePS5100557.5519166IPR003441NAC domain
PfamPF023652.5E-2820144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGSIENASKP RKENPKFELP AGFRFHPTDE ELINQYLTKK VVDNCFCAIA IGEVDLNKCE  60
PWDLPGLAKM GETEWYFFCV RDRKFPTGIR TNRATDIGYW KATGKDKEII MENALIGMKK  120
TLVFYKGRAP KGEKTNWVMH EYRLEGKHNQ PKPGKSEWVI CRVFEKSRCG KKMHVPKCGR  180
FNNPFGEEPS SGASLLPPLM DSSPYNSETR TTTAGELSQV TCFSDPNQTE DQNNTHDDIV  240
DSMETPILNF SPFSRPDDAS TLAKATLSSA SNQSAQIAHQ IGESQFPDYC YAPQEPSMLR  300
MLMENHEPCA KQTQKEEFPE GRDFDGDISS MIYSSDMINR MFGNQEHSSS ASAGPVDTDF  360
LWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-521617214171NO APICAL MERISTEM PROTEIN
1ut4_B7e-521617214171NO APICAL MERISTEM PROTEIN
1ut7_A7e-521617214171NO APICAL MERISTEM PROTEIN
1ut7_B7e-521617214171NO APICAL MERISTEM PROTEIN
3swm_A7e-521617217174NAC domain-containing protein 19
3swm_B7e-521617217174NAC domain-containing protein 19
3swm_C7e-521617217174NAC domain-containing protein 19
3swm_D7e-521617217174NAC domain-containing protein 19
3swp_A7e-521617217174NAC domain-containing protein 19
3swp_B7e-521617217174NAC domain-containing protein 19
3swp_C7e-521617217174NAC domain-containing protein 19
3swp_D7e-521617217174NAC domain-containing protein 19
4dul_A7e-521617214171NAC domain-containing protein 19
4dul_B7e-521617214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G261300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3923980.0JX392398.1 Glycine max NAC domain protein (NLP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551739.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_006602918.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_006602923.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025982386.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025982387.10.0NAC domain-containing protein 100-like isoform X1
SwissprotQ9FLJ21e-103NC100_ARATH; NAC domain-containing protein 100
TrEMBLK7MUU00.0K7MUU0_SOYBN; Uncharacterized protein
STRINGGLYMA18G49620.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-102NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]