PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G224300.1.p | ||||||||
Common Name | GLYMA_18G224300, LOC100813753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27753.8 Da PI: 8.9566 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.3e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+ KKA+ELSvLCdaeva++ifs +gk ++++ Glyma.18G224300.1.p 9 KRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSARGKPFTFP 58 79*********************************************998 PP | |||||||
2 | K-box | 85.9 | 8e-29 | 82 | 169 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e +++ ++qe+ kL+++ e+Lqr+qR l GedL++Ls+keL Le+qLek+l++ R++K++l+++q+eel++ke+ l++ nk+Lr k Glyma.18G224300.1.p 82 IELENQDWYQEMLKLNEKCESLQRTQRLLHGEDLGPLSIKELLILEEQLEKALSQARQRKTQLMIKQMEELRQKERHLEDLNKELRLK 169 466789*******************************************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.6 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.63E-38 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-31 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-25 | 85 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.706 | 86 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FSKRRNGLVK KAKELSVLCD AEVALVIFSA RGKPFTFPDD 60 AESIMKTYDR YRKYYSHQHG NIELENQDWY QEMLKLNEKC ESLQRTQRLL HGEDLGPLSI 120 KELLILEEQL EKALSQARQR KTQLMIKQME ELRQKERHLE DLNKELRLKP PFQLEPYGFN 180 LKASLWGSTS SADGDGSFPL QPSLTYPEPF LQIGYSVQGE PSIVPKSMAS ETNFQGWFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-18 | 82 | 169 | 16 | 100 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-18 | 82 | 169 | 16 | 100 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-18 | 82 | 169 | 16 | 100 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-18 | 82 | 169 | 16 | 100 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G224300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551643.1 | 1e-177 | agamous-like MADS-box protein AGL6 isoform X1 | ||||
Refseq | XP_028212482.1 | 1e-177 | agamous-like MADS-box protein AGL6 | ||||
Swissprot | Q8LLR1 | 8e-91 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A445FXR0 | 1e-176 | A0A445FXR0_GLYSO; Agamous-like MADS-box protein AGL6 | ||||
TrEMBL | K7MU29 | 1e-176 | K7MU29_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G45761.1 | 1e-177 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 5e-71 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G224300.1.p |
Entrez Gene | 100813753 |
Publications ? help Back to Top | |||
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