PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G213200.1.p
Common NameGLYMA_18G213200, Glyma18g44560.1, WRKY57
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 300aa    MW: 33868.7 Da    PI: 6.3967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G213200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781e-24123183259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dDg++WrKYGqKe+ +++fpr+YYrCt++   gC+++k+v+r +e+p + ++tY g H+++
  Glyma.18G213200.1.p 123 DDGHQWRKYGQKEILSAKFPRNYYRCTHKfdqGCQATKQVQRVQEEPILYKTTYYGLHTCK 183
                          8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-25110184IPR003657WRKY domain
PROSITE profilePS5081119.933117180IPR003657WRKY domain
SuperFamilySSF1182902.75E-24120183IPR003657WRKY domain
SMARTSM007745.8E-36122184IPR003657WRKY domain
PfamPF031062.5E-24123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAKLGCSSRR KAIEELLRGR DCAKQLRSVI NGSCEDGSST TPSFAEQLVK EVLMSFTNSL  60
SFLKNNPTSE SHDVSNVQVC ESPKSEDSQE SNCKSSIIKE RRGCYKRRRT EQTWEKESEA  120
PIDDGHQWRK YGQKEILSAK FPRNYYRCTH KFDQGCQATK QVQRVQEEPI LYKTTYYGLH  180
TCKNLANPEI ILDPMSPSSS SKFLSFDNSF PTPSKQECPF LSSSNLPSSV KGECKEEVPP  240
STSSNHYLIS SDLTFDSSPR HHVTLSSTLD SEYKSVDISD VLYDSAQLDD AFEPFLEFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20122183869OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.324530.0cotyledon| flower| leaf| root| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G213200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753530.0EU375353.1 Glycine max transcription factor (WRKY57) mRNA, complete cds.
GenBankKT0312410.0KT031241.1 Glycine max clone HN_CCL_112 WRKY transcription factor (Glyma18g44560.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237619.10.0WRKY transcription factor 57
TrEMBLB0LUS20.0B0LUS2_SOYBN; Transcription factor
STRINGGLYMA18G44560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-40WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]