PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G205100.1.p
Common NameGLYMA_18G205100, LOC100784347
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 544aa    MW: 61256.1 Da    PI: 4.5786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.34.2e-401785423374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++g+++l + +L  +s+ asp g++++Rla+y+ +++ ++           l+ ++      ++  aal+++++ +Pi k
  Glyma.18G205100.1.p 178 HLLKAYGEALEQGQKALEEVILRCISQKASPLGESLERLAFYLSQGMTNHGDY--------LKGEA-----LKNFEAALRALYQGFPIGK 254
                          78888999***************************************998765........33333.....5577789999********* PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfe 177
                          ++h++a +aIlea+ ++  vHi+Df i++G+QWp++++a+a  ++    l +T ++   ++     s  + eet+++L + A+++g++++
  Glyma.18G205100.1.p 255 IAHFAAVSAILEALPQDCDVHIVDFYIGHGVQWPPMIEAIAHMNKT---LTLTSIKWGGEVpecvsSPCNFEETRRQLYEHAKSCGLKLK 341
                          *****************************************87644...55555544333333445999*******************99 PP

                 GRAS 178 fnvlvakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvveqe..adh.nsesFle 255
                           +    k +e+l  ++++++ k   gE la n+ + l ++   +v ++++  ++L++  +l ++     ++++++ +   +  n+ +F  
  Glyma.18G205100.1.p 342 VEE---KGVEELvsDIKKMNKKGekGEFLAFNCTIDLPHMG--KVRSRKHALQFLRVADELISTsdnrgIITFADGDafEKVkNNLNFRS 426
                          987...4444442234444333355***************9..6777777899***9999855333444*******9532336999**** PP

                 GRAS 256 rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           f   l +y al++s+e+ +p+   e+ri +E+ +l++ i+++   ++ e  +r  +l       ee  ++  +ls+++ ++++ +lr  
  Glyma.18G205100.1.p 427 FFDGHLVHYQALLESMESHFPTSFsEARIAMEKLFLQPCISSLDWLQTWEEMKRGGHL------EEETSLEGCQLSKNILMEIREVLRGS 510
                          ********************987569***************99888888844444433......356778889***************** PP

                 GRAS 345 k.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                          + s   r+e +++++lvl  k+ +L+ +S W+
  Glyma.18G205100.1.p 511 DgSYQARIEgQHDNELVLEYKGTQLLRFSTWK 542
                          966667787888*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.669150520IPR005202Transcription factor GRAS
PfamPF035141.5E-37178542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MMQSEDLQFQ WPFFEDMNST FDQGVESYGF TTMYGHVGDC GPYDFTMNDH VGDCGLNTLL  60
STPEDSTSEI CSIPFPSSPI FSIDHIHIQY PINEETMHLP SLMELDDFDS ILDTQIISIQ  120
GHGESEGSFF PSQNFSSEVE NAWSPTPSVR SELSTNQTSP LTLPLENMEV ENQVSLPHLL  180
KAYGEALEQG QKALEEVILR CISQKASPLG ESLERLAFYL SQGMTNHGDY LKGEALKNFE  240
AALRALYQGF PIGKIAHFAA VSAILEALPQ DCDVHIVDFY IGHGVQWPPM IEAIAHMNKT  300
LTLTSIKWGG EVPECVSSPC NFEETRRQLY EHAKSCGLKL KVEEKGVEEL VSDIKKMNKK  360
GEKGEFLAFN CTIDLPHMGK VRSRKHALQF LRVADELIST SDNRGIITFA DGDAFEKVKN  420
NLNFRSFFDG HLVHYQALLE SMESHFPTSF SEARIAMEKL FLQPCISSLD WLQTWEEMKR  480
GGHLEEETSL EGCQLSKNIL MEIREVLRGS DGSYQARIEG QHDNELVLEY KGTQLLRFST  540
WKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G205100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552270.20.0nodulation-signaling pathway 2 protein
TrEMBLI1N3090.0I1N309_SOYBN; Uncharacterized protein
STRINGGLYMA18G43580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-14RGA-like 1