PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G201800.5.p
Common NameGLYMA_18G201800, LOC100527384
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 190aa    MW: 21350.4 Da    PI: 9.1434
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G201800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.61.5e-091233355
              G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                         +++m+v  L ++hvkSHLQkYR+
  Glyma.18G201800.5.p  1 MKAMGVSELNIYHVKSHLQKYRI 23
                         799*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-9124IPR009057Homeodomain-like
PfamPF143799.4E-135594IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKAMGVSELN IYHVKSHLQK YRISKLIPES PTRGKLEKRS MSDILPNFSS ITALQLKEVL  60
QMQTGMQNRL RDKTEVQRSL KLKIEAQGKY FERIGQSNHS KTIIGKACKP FASTIASLPS  120
LFEESESLKT QPEEEHQSAK KQKISGEGVF PTSFDHESST PPECYNETWD FSWSQLAAAC  180
QSPLVPSFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G201800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922230.0BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235321.11e-139MYB-CC domain-containing transcription factor PHR29
RefseqXP_006601779.11e-138MYB-CC domain-containing transcription factor PHR29 isoform X1
TrEMBLC6T4621e-137C6T462_SOYBN; Uncharacterized protein
TrEMBLK7MTI91e-137K7MTI9_SOYBN; Uncharacterized protein
STRINGGLYMA18G43130.21e-137(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-26G2-like family protein