PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G179300.1.p | ||||||||
Common Name | GLYMA_18G179300, LOC102663963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 211aa MW: 24182.1 Da PI: 8.8237 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ r+psa+++++++++l +++ ++V++WFqN++a++++ Glyma.18G179300.1.p 7 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 118.1 | 3.9e-38 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk Glyma.18G179300.1.p 6 SSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.592 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-4 | 4 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-8 | 7 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.89E-11 | 7 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-18 | 7 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.32E-4 | 8 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSPAGSSRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH 60 KARDRQKLRR KLTKQLQLQQ QQQQQQFQLH HHCQQLNQDH ITNHFVGSFG YSTARSTTHD 120 FSFFNSPSLI FQGGAANTPE QALSCKWNVH NPQSNLVENK EMAFCNYGWT LVDVDNQASS 180 CCTTRPLKTL DLFPLTTTRI NEDCTATPPK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G179300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-102 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602580.1 | 1e-158 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | K7MT21 | 1e-156 | K7MT21_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G39520.2 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 | Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-36 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G179300.1.p |
Entrez Gene | 102663963 |