PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G133900.1.p | ||||||||
Common Name | GLYMA_18G133900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 140aa MW: 16521.8 Da PI: 6.7495 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.6 | 3.2e-21 | 49 | 139 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 fY YA+ GFs+rksk k+ +ge t++tf Cs++g re++ ++e+++ + tr++C+ak++v+ +k +wev++++ eHnH+l Glyma.18G133900.1.p 49 FYYWYARINGFSLRKSKVVKN-CKGEKTQQTFLCSRQGVREDKGLTNETRKCeLINDTRCECNAKFVVHVMKnYRRWEVKEFSDEHNHKL 137 9****************9999.77889***************9988444443156789*************9899**************9 PP FAR1 90 ap 91 p Glyma.18G133900.1.p 138 LP 139 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-18 | 49 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MSFMNFNYCF ALLDEDEFEE KPSGEPIIIN GLVDIGDINM SNLEATYLFY YWYARINGFS 60 LRKSKVVKNC KGEKTQQTFL CSRQGVREDK GLTNETRKCE LINDTRCECN AKFVVHVMKN 120 YRRWEVKEFS DEHNHKLLPP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G133900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235395 | 1e-165 | AC235395.1 Glycine max strain Williams 82 clone GM_WBb0118D03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630796.1 | 4e-31 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0R0F0E8 | 1e-101 | A0A0R0F0E8_SOYBN; Uncharacterized protein (Fragment) | ||||
STRING | GLYMA18G18095.1 | 2e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-09 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G133900.1.p |