PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G062200.1.p
Common NameGLYMA_18G062200, LOC100787878
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 609aa    MW: 66475.4 Da    PI: 6.0721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G062200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-07279299526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Glyma.18G062200.1.p 279 PCPEFRK-GSCSKGDACDYAHG 299
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.0E-1332174IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-1373149IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-875142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03575105IPR002110Ankyrin repeat
PROSITE profilePS5029715.56575145IPR020683Ankyrin repeat-containing domain
CDDcd002041.76E-1277169No hitNo description
PROSITE profilePS5008812.102110145IPR002110Ankyrin repeat
SMARTSM002480.0027110142IPR002110Ankyrin repeat
SMARTSM003569.2E-5274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216274301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4279301IPR000571Zinc finger, CCCH-type
SMARTSM003565.4309331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MCSGSKRKPS QTGLIMGDEY GRQEGLHHEI SALLEFSAAD DVRAFRDAVE KEGRDFDEVG  60
LWYGRRVGSK VLCFEERTPL MIAAMFGSKS VLSYILGTGL VDVNRASGSD GATALHCAVA  120
GGSSASLEII KLLLDASADV STVDANGNRS CDLIFSVSNG VFNSRKRILQ AILEGADGID  180
EACLPFEEAV GQMEKQQQQD VDAFQVSKDG TEKKDYPVDL SLPDIKNGIY SSDEFRMYTF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RRYQYSCVPC PEFRKGSCSK GDACDYAHGI  300
FECWLHPAQY KTRLCKETGC TRRVCFFAHN VEDLRPVYAS TGSAMPSPRS YSVSTPSLDP  360
FTLGSPSSLI PPASTPPLTP SRGSSPAGET MWHSQSHATV PTLQLPQSRL KSALNARDVE  420
LDMELLGIEN HRLLMQQHLM MEGMAGLSSP SNWNNSMPNS PSVGDYTGEF NRLAGVQPTN  480
LDDIFGSQIQ YPARIQVHQN VNQQLRGYPS NPYNSSVIGS PSFRVDPSGT AATMPLNPRN  540
AAFANRSQSF VEPNMVNIDS DFPSATSTAA EPSTFSGWGP SDGKLDWSIR GDELKKPSKS  600
SSSGFLKQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.450830.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G062200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551272.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_006602092.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_006602093.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_028212434.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_028212435.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A445FPZ10.0A0A445FPZ1_GLYSO; Zinc finger CCCH domain-containing protein 66
TrEMBLI1MZZ20.0I1MZZ2_SOYBN; Uncharacterized protein
STRINGGLYMA18G06980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-177C3H family protein