PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G053200.1.p | ||||||||
Common Name | GLYMA_18G053200, LOC100794409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 329aa MW: 37387.8 Da PI: 7.5388 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.4 | 5e-15 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + n+s+r++ kR++ +lKK eELS+LC++e++ i+++++++ Glyma.18G053200.1.p 11 VANDSQRKTVCKKRKQSLLKKTEELSTLCGIEACAIVYGPNDH 53 689************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.512 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-20 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.91E-24 | 5 | 85 | No hit | No description |
Pfam | PF00319 | 9.7E-14 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MATGKLKLTF VANDSQRKTV CKKRKQSLLK KTEELSTLCG IEACAIVYGP NDHRPEIWPS 60 ESGVKNVLGK FMNKPQWEQS KKMMNQESFI AQSIMKSKDK LQKVVKENKE IEMSLFMAQC 120 FQTGMFQPDI NMTAADMNVL SSEIEQNLKD IDKRMEMLKA NQVTPNQPDI ESLTFQPQIM 180 QTSAFQPQIQ IPAFETQIQT QTYQSQMETP TFQPQMQSPA LFQPQIQTAS YQPHMQTQSY 240 HPHMQATSFP TQMQAPSYQP QMQTPAYQPD IQTLAFEPQM QTPAPEEMTL MNYGYGSGMN 300 ANHMHRQKFN GNGYETIMPA FGGAKLPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 24 | QRKTVCKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G053200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235739 | 0.0 | AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552915.1 | 0.0 | MADS-box transcription factor PHERES 1 | ||||
TrEMBL | K7MQ37 | 0.0 | K7MQ37_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G05963.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36544 | 2 | 2 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-40 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G053200.1.p |
Entrez Gene | 100794409 |