PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G043000.5.p | ||||||||
Common Name | GLYMA_18G043000, LOC100815360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 477aa MW: 51669.8 Da PI: 8.2252 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 288 | 341 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Glyma.18G043000.5.p 288 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 341 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-15 | 285 | 341 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 286 | 341 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 288 | 341 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-7 | 289 | 340 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MPLEGIFIEP TSTSTPDLSL HISPPSTSFS SSSICNNNNT SGGGGGINYE ARNSTSTNFP 60 SQAHIELSLG RNFSVGGGRG GGVPEEPLPH HNNNINNNPY YQTQQAHFHH LQHHSNASRA 120 TTTTSTTTSS SNHMSHINYG VSLLDVSSEG LRPIKGIPVY HNRSFPFLPS EHSRDNKDHH 180 AKMCLYHHMP TYPSLSSSCS PLCSSSSSSS SPAAPYFAAA AAAYRAATAT RFNGISGEAF 240 KSHHPLHHHH SSSPHYGVGL GPSHETSAGL MRSRFLPKLP AKRSMRAPRM RWTSTLHARF 300 VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDKPAA SSGLSDGSGE 360 DDMSPMGSSG GMRQFSDQRS LSDRPLQQDM DYSSGNNTLW SNSSSSRETW QQNNSNDVDG 420 FRPPIFQSQQ ISGGHQIQEC DSTQLKNSLS GSNLECKNPS LEFTLGRPDW NGKGQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 289 | 343 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 289 | 343 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 289 | 343 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 289 | 343 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.17021 | 0.0 | flower| hypocotyl| leaf| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G043000.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-180 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602023.1 | 0.0 | transcription repressor KAN1 isoform X2 | ||||
TrEMBL | K7MPV5 | 0.0 | K7MPV5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G04880.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 2e-61 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G043000.5.p |
Entrez Gene | 100815360 |