PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G042000.1.p | ||||||||
Common Name | GLYMA_18G042000, LOC100813231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27296.6 Da PI: 10.4597 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.5 | 7.3e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+ Glyma.18G042000.1.p 10 FIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSP 50 899*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.82 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.62E-24 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-19 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTRKKVKLAF IANDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIVYSP YDPQPEVWPS 60 PMGVQRVLAK FRRMPELEQS KKMVNQESFL RQRIMKAKDQ LKKQRKDNRE KEMTQLMFQY 120 LSAGKIMHNI SMVDLNDLAW LIDQNLKDIN RRIEVLTKNA QSQPQIAAPA VTDVAAKVED 180 KGQGSQHGHQ GFDINMDLMQ KQNWFMNLMN NGGGGGNEAM PIVGDVNQQN GFWPNPFFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFIANDSARKATFKKRK |
2 | 21 | 25 | KKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G042000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552882.1 | 1e-179 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-66 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | I1MZG2 | 1e-178 | I1MZG2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G04760.1 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-69 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G042000.1.p |
Entrez Gene | 100813231 |
Publications ? help Back to Top | |||
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