PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G256500.1.p | ||||||||
Common Name | GLYMA_17G256500, LOC100813003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 934aa MW: 103492 Da PI: 5.5192 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.2e-24 | 151 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F Glyma.17G256500.1.p 151 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI- 238 99*********************999*****9555555.49************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+v+v+r Glyma.17G256500.1.p 239 -RDEKSQLRVGVRRV 252 .4577778****985 PP | |||||||
2 | Auxin_resp | 114.2 | 1.2e-37 | 277 | 360 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k++ ++vsvGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+SkWr+++ Glyma.17G256500.1.p 277 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQ 360 79********************************988********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-46 | 139 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-41 | 144 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.86E-23 | 150 | 251 | No hit | No description |
SMART | SM01019 | 8.5E-25 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-21 | 151 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-32 | 277 | 360 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.9E-11 | 824 | 914 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.746 | 827 | 911 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.61E-8 | 829 | 906 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 934 aa Download sequence Send to blast |
MMASVEEKIK TGGVGGGMVV GGQTLVAEMK LLKEMQEHSG VRKTLNSELW HACAGPLVSL 60 PQVGSLVFYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL LCQVQNATLH ADKETDEIYA 120 QMTLQPLNSE REVFPISDFG LKHSKHPSEF FCKTLTASDT STHGGFSVPR RAAEKLFPPL 180 DYTIQPPTQE LVVRDLHDNT WTFRHIYRGQ PKRHLLTTGW SLFVGSKRLR AGDSVLFIRD 240 EKSQLRVGVR RVNRQQTTLP SSVLSADSMH IGVLAAAAHA AANRSPFTIF YNPRACPSEF 300 VIPLAKYRKS VFGTQVSVGM RFGMMFETEE SGKRRYMGTI VGISDVDPLR WPGSKWRNIQ 360 VEWDEPGCGD KQNRVSVWEI ETPESLFIFP SLTSGLKRPL PSGLLENEWG TLLTRPFIRV 420 PENGTMELSN SIPNLYSEHM MKMLFKPQLI NNNGAFLSAM QQESAATRGP LQEMKTTLAA 480 ENQMLLKNLH PQSIPDQPNA LNMQSLLKND QPEKFHPLAK IDNHLPSGIV IDKPKLECEV 540 LPDRVIDYPS MEGCNNEKVA VNPVNQQGLA TQLPFHNQNQ SPLLPQSSPW PMQPLIESSM 600 PHPQMIGMAQ ADSAMVNGLF PQLDIDEWLA YASSQPFAGQ NRPTGPFSDL QEHNSLQPQV 660 VNPPLPSMNN EVWDHYVKNF KFLSQADQLT SICQPGMYGL NGVPSSNNLR DLSAESNNQS 720 EICVNVDASN SVGTTMVDPS TSSTILDEFC TMKDGEFQNP QDCMVGNLSS SQDVQSQITS 780 ASLAESHAYP LRDIPDNSGG TSSSHVDFDE SSFLQNNSWQ QVPAPIRTYT KVQKAGSVGR 840 SIDVTTFKNY EELIRAIECM FGLDGLLNDT KGSGWKLVYV DYESDVLLVG DDPWEEFVGC 900 VRCIRILSPS EVQQMSEEGM KLLNSGALQG MNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 385 | 1 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23542 | 0.0 | cotyledon| seed coat| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G256500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601343.1 | 0.0 | auxin response factor 5 | ||||
Refseq | XP_028210922.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A445GBV3 | 0.0 | A0A445GBV3_GLYSO; Auxin response factor | ||||
TrEMBL | I1MY19 | 0.0 | I1MY19_SOYBN; Auxin response factor | ||||
STRING | GLYMA17G37580.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 | Representative plant | OGRP8260 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G256500.1.p |
Entrez Gene | 100813003 |