PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G240700.1.p
Common NameGLYMA_17G240700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 286aa    MW: 32141.5 Da    PI: 7.842
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G240700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.99.1e-2891431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k......kvkaeekewyfFskrdkkyatgkrknratksg 81 
                          lppG+rF P++e lv +yL+kk e+++  +  ++ i+e+d+y+++P +Lp +       +  + ++ ++F+ +++   t++r++r++ksg
  Glyma.17G240700.1.p   9 LPPGYRFYPSEEVLVGYYLTKKNENREegFYGSDLIRELDLYDHDPFELPdAaacfsyGY--KGRKKHWFCYAKE---TKRRNRRKVKSG 93 
                          79*********************999966566688**************95367764433..4445555555544...34588999**** PP

                  NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          +W  +gk +++ ++  ++ + g+++ +vfy g + +++ +tdW++ ey+l
  Glyma.17G240700.1.p  94 FWLRKGKVRDISDHngDDVVLGTRTRFVFYVGnSLKNAARTDWILYEYAL 143
                          ************995555669*********874668889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-326159IPR003441NAC domain
PROSITE profilePS5100535.6399159IPR003441NAC domain
PfamPF023651.2E-1610143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEDHAHAALP PGYRFYPSEE VLVGYYLTKK NENREEGFYG SDLIRELDLY DHDPFELPDA  60
AACFSYGYKG RKKHWFCYAK ETKRRNRRKV KSGFWLRKGK VRDISDHNGD DVVLGTRTRF  120
VFYVGNSLKN AARTDWILYE YALVDRFLAS FVLCRVVNKP PHKNSPSEIG LSCCAEESVV  180
AVVRHVGVQC DGCAESDVVE AKVCDEGFVN RENEIAENPI SGEHGDPAAP VSVAQGSQPL  240
SIANFCISNC LKNLFRIRVI NTGNQSKCLL FRKGFLNFPV AVHCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-17515913165NO APICAL MERISTEM PROTEIN
1ut4_B3e-17515913165NO APICAL MERISTEM PROTEIN
1ut7_A3e-17515913165NO APICAL MERISTEM PROTEIN
1ut7_B3e-17515913165NO APICAL MERISTEM PROTEIN
3swm_A3e-17515916168NAC domain-containing protein 19
3swm_B3e-17515916168NAC domain-containing protein 19
3swm_C3e-17515916168NAC domain-containing protein 19
3swm_D3e-17515916168NAC domain-containing protein 19
3swp_A3e-17515916168NAC domain-containing protein 19
3swp_B3e-17515916168NAC domain-containing protein 19
3swp_C3e-17515916168NAC domain-containing protein 19
3swp_D3e-17515916168NAC domain-containing protein 19
4dul_A3e-17515913165NAC domain-containing protein 19
4dul_B3e-17515913165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.2680.0hypocotyl| meristem| root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G240700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028208769.10.0NAC domain-containing protein 104-like isoform X1
TrEMBLK7MNN80.0K7MNN8_SOYBN; Uncharacterized protein
STRINGGLYMA17G35930.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Representative plantOGRP1150445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-26NAC domain containing protein 11