PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G240300.1.p | ||||||||
Common Name | GLYMA_17G240300, LOC100788918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 245aa MW: 28079.6 Da PI: 9.8646 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 97 | 156 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Glyma.17G240300.1.p 97 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLskygKIEGKNVFYWFQNHKARERQ 156 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 119.5 | 1.4e-38 | 97 | 158 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq Glyma.17G240300.1.p 97 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQ 158 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 8.3E-7 | 94 | 161 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.45E-12 | 96 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.25E-4 | 97 | 158 | No hit | No description |
Pfam | PF00046 | 3.8E-19 | 97 | 156 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 98 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.042 | 102 | 157 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MKVHQFARGF WEHEPSLTLG CKRLRPLAPK LSNTDDTISP PHHHPVTTLD LKSFIKPQSA 60 SRKLGIGSSS DDNNNNNNKR DPSSPHGQVE THIPGGTRWN PTQEQIGILE MLYRGGMRTP 120 NAQQIEQITA QLSKYGKIEG KNVFYWFQNH KARERQKQKR NNLGLAHSLR TTPTTIVSHP 180 FSCSVITTLD TTKRGEIVER EEEDSPLKKC RSWAFEYLED QREEEHRTLE LFPLHPEGRR 240 RGLF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.54832 | 0.0 | epicotyl| hypocotyl| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G240300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091619 | 0.0 | BT091619.1 Soybean clone JCVI-FLGm-8M2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601279.1 | 0.0 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 2e-67 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | K7MNN6 | 0.0 | K7MNN6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G35880.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 | Representative plant | OGRP7167 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 2e-69 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G240300.1.p |
Entrez Gene | 100788918 |