PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G230000.2.p | ||||||||
Common Name | GLYMA_17G230000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 548aa MW: 60711.3 Da PI: 6.3775 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 466 | 504 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Glyma.17G230000.2.p 466 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 504 5887779******************************88 PP | |||||||
2 | BELL | 62.7 | 7.9e-21 | 340 | 405 | 4 | 70 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 + ++ k++Ll ll+ Vd+ Y+q+ ++++tv+s+F+a+++l++ ++++++Al++iS ++ L+++i++ Glyma.17G230000.2.p 340 ATESNKSQLLMLLQLVDNGYSQCLDEIHTVVSAFHAATELDP-HMHAHFALQTISLLYKDLRERISN 405 56889*************************************.**********************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-20 | 261 | 405 | IPR006563 | POX domain |
Pfam | PF07526 | 8.5E-24 | 267 | 404 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.046 | 445 | 508 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.32E-10 | 448 | 509 | No hit | No description |
SMART | SM00389 | 2.1E-5 | 448 | 512 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-15 | 450 | 517 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 451 | 514 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.7E-15 | 465 | 504 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 548 aa Download sequence Send to blast |
MENNMYSARL DMAGRNSTGI DEIARHLAPK PLIHCYSFDL NNQNHIINGI PVLAGEQGEP 60 ANDVHVEGDA SNQINNNDFQ EHLVGGRPIA SASLSAARIG LQANLESSEA LPYSMCSLEA 120 LGPYLFNNWQ GTSNPLPATF GDHHHAYDEL SSIGKWNVNK ILRAPEADGT EILAYSSIGS 180 LVQNGWTSSN VANLANFAYN SPHCSNELSL SLARSPQTTG QCSEMSCSGA SHSMNGTRSG 240 LEQSSCSSKE LCMRLGSNKH VQFSSAILGS RFLVGIQEIL AQIATYSFEN VEQINCSAAG 300 VRAGGDKSAS AFTPKRTVEN NQNASMFGAH VEESPLEGLA TESNKSQLLM LLQLVDNGYS 360 QCLDEIHTVV SAFHAATELD PHMHAHFALQ TISLLYKDLR ERISNCILAM GPDFNSLCSE 420 EEKEWSLETS FIQKQWALQQ LKRKDQLWRP QRGLPERSVS VLRTWMFQNF LHPYPKDAEK 480 HLLAVKSGLT RSQVSNWFIN ARVRLWKPMI EEMYAEMSRR KACRNEEGME ITQRTRISMK 540 NQMLNIN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 4e-14 | 454 | 512 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-14 | 454 | 512 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}. | |||||
Uniprot | TISSUE SPECIFICITY: Most abundant in flowers. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G230000.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549357.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_006601241.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_006601242.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_006601243.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_025982109.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_028210100.1 | 0.0 | homeobox protein ATH1-like | ||||
Refseq | XP_028210101.1 | 0.0 | homeobox protein ATH1-like | ||||
Refseq | XP_028210102.1 | 0.0 | homeobox protein ATH1-like | ||||
Refseq | XP_028210103.1 | 0.0 | homeobox protein ATH1-like | ||||
Swissprot | P48731 | 1e-101 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A0R0FQW4 | 0.0 | A0A0R0FQW4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G34811.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-103 | homeobox gene 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G230000.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|