PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G224800.1.p | ||||||||
Common Name | GLYMA_17G224800, LOC100796836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 165aa MW: 18861.6 Da PI: 5.6515 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.5 | 5e-32 | 103 | 161 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ gC+vkk+ver+++dp++v++tYeg+H+h+ Glyma.17G224800.1.p 103 LDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCNVKKRVERDKDDPRYVITTYEGNHTHP 161 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.7E-34 | 89 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-29 | 96 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 98 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-37 | 103 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 104 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MTDKIPKPPP PDTPDSDDFT NQWPFELSEY LKFDDNQWMH DGLESFASEN VSNQVHQVSN 60 AGEFGGGSSH FEGSSSKDTS SGRENREVRE RVAFKIMSEI EVLDDGYRWR KYGKKMVKNS 120 PNPRNYYRCS VDGCNVKKRV ERDKDDPRYV ITTYEGNHTH PSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-26 | 93 | 160 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-26 | 93 | 160 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G224800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 2e-33 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601221.1 | 1e-121 | probable WRKY transcription factor 50 isoform X1 | ||||
Refseq | XP_028210037.1 | 1e-121 | probable WRKY transcription factor 50 isoform X1 | ||||
Swissprot | Q8VWQ5 | 1e-40 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A445GAA4 | 1e-119 | A0A445GAA4_GLYSO; Putative WRKY transcription factor 50 isoform A | ||||
TrEMBL | K7MND8 | 1e-119 | K7MND8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G34210.2 | 1e-120 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-41 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G224800.1.p |
Entrez Gene | 100796836 |
Publications ? help Back to Top | |||
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