PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G223100.1.p | ||||||||
Common Name | GLYMA_17G223100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 29451.1 Da PI: 5.394 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 161 | 208 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn +Er RR +iN+++ L+ ++P + k +s a +L + ++Y sL+ Glyma.17G223100.1.p 161 SHNLAERVRRGKINEKLRYLQNIVPGC----YKTMSMAVMLDEIINYFLSLE 208 8*************************8....366*************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-13 | 155 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.05E-8 | 155 | 208 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-13 | 157 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.608 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 161 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-5 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAEFTENLQN ISSSSPFLDI DPSMELLNQF IGMNQLYVLD NSNLMPYFSC DTFLGPQEPE 60 FPGNLEEDFP FLFHHVNHNA PPVSLPIFQA ENEIHEGNKR KSMDLLETSF ANSTSAVSET 120 GSKIKHSSGR GKRLKNNVTE EEEKAKEVVN ARARRGQATD SHNLAERVRR GKINEKLRYL 180 QNIVPGCYKT MSMAVMLDEI INYFLSLELT AASTFYDFNS EIDAFETMQR SRAYEAKELG 240 KYKREGHGGV SLLQPTWHL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G223100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031256 | 1e-155 | KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550247.1 | 0.0 | transcription factor BEE 1 | ||||
Refseq | XP_028209065.1 | 0.0 | transcription factor BEE 1-like | ||||
Swissprot | Q8GZ13 | 9e-47 | BEE1_ARATH; Transcription factor BEE 1 | ||||
TrEMBL | I1MX53 | 0.0 | I1MX53_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G34010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 1e-44 | BR enhanced expression 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G223100.1.p |
Publications ? help Back to Top | |||
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