PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G222500.1.p
Common NameGLYMA_17G222500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 279aa    MW: 31609.1 Da    PI: 8.5802
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G222500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.34.8e-26108166158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ k++  pr+Y+rC +a  Cp+kkkv+r+ +d+++++ +Y geH h
  Glyma.17G222500.1.p 108 VKDGYQWRKYGQKVTKDNASPRAYFRCYMApICPAKKKVQRCLHDKSILVAIYDGEHSH 166
                          58**************************999***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-26101167IPR003657WRKY domain
PROSITE profilePS5081122.045103166IPR003657WRKY domain
SuperFamilySSF1182906.67E-23104167IPR003657WRKY domain
SMARTSM007744.7E-28108168IPR003657WRKY domain
PfamPF031061.4E-21109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVVQLFNTEI IMDEKVETIK AELKRVREEN NTLRMMLEVL SSKYTKLETH LQEINKTQHK  60
GMSSNQIGSV TVPPMFQTNK RPRLEFPTAK KPLQIFVKTH PKDDSLIVKD GYQWRKYGQK  120
VTKDNASPRA YFRCYMAPIC PAKKKVQRCL HDKSILVAIY DGEHSHGPLD ESSSSTPKGS  180
SPVANNKLPL MTSVPNYIEA MNIDLALSGW SQTDRRHCED VMQQNNNNGG SNIKIEEYVS  240
SLIKDPDFTM SLAEAVARTI TGQQKQQDLN LNLELPEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-161071661371WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.167330.0cotyledon| meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G222500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959380.0BT095938.1 Soybean clone JCVI-FLGm-20I19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624934.10.0WRKY transcription factor 63 isoform X1
TrEMBLI1MX450.0I1MX45_SOYBN; Uncharacterized protein
STRINGGLYMA17G33920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Representative plantOGRP1149547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-41WRKY DNA-binding protein 40