PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G213900.1.p | ||||||||
Common Name | GLYMA_17G213900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 356aa MW: 40228.8 Da PI: 5.4091 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 123 | 166 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE++ ++ + + + Wk I+ + +t+ q+ s+ qky Glyma.17G213900.1.p 123 WTIEEHKSFLFGLEIKKEKGWKQISDKYVPSKTASQVASHAQKY 166 *************************99988*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.229 | 115 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-5 | 117 | 170 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-11 | 117 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-9 | 118 | 169 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 7.19E-4 | 123 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSDHYFDEEE ILELLKENDW PVFDDLFNNF ATQDSSPPAD EIIPGNDDSS PPADDEILAA 60 HEVLDTPAPL PVPPPAPAPN RVHTSATALD PAPQMVLASQ DPSHVILSGD SSHSVHHKKY 120 EHWTIEEHKS FLFGLEIKKE KGWKQISDKY VPSKTASQVA SHAQKYIKRK NTPMNERKRR 180 SIHDTILEDI DIIRIDQHNW VPPTSNFIVQ PHTLGSNWVP STSNLMVQSH TPVTDQHNWI 240 PPCPPNFAVP PRIPHVDQDT WVPPPPNFAV QPPTPHIDQH NWVPSPPNLA PHTSLIDQDN 300 WVPTPPDFAV QPHEMQRAQH KQMQQLNLHS SSPQMDEYRN FNCGHPQNEL DLIAQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G213900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601664.1 | 0.0 | myb-like protein J | ||||
TrEMBL | A0A0R0FGI1 | 0.0 | A0A0R0FGI1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G45255.1 | 1e-143 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26727 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-14 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G213900.1.p |