PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G180800.1.p | ||||||||
Common Name | GLYMA_17G180800, LOC100815521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 161aa MW: 18475.4 Da PI: 9.2331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.6e-14 | 92 | 137 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+ri++++ L+ l+P++ K +Ka +L +A+eY+k+Lq Glyma.17G180800.1.p 92 HNLYEKRRRSRIKEKMKALQNLIPNS-----NKTNKALMLDEAIEYLKQLQ 137 9************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-18 | 84 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.31E-14 | 85 | 141 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 85 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.005 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 92 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-14 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MTSSWRSSAC APWTMSTIGT SRTLTIMMRR STICTTLTET FQASTLMSFL PPQENPNFVN 60 PQLLFPLLYS SQQIPIPPLC SSSKRSRAVE FHNLYEKRRR SRIKEKMKAL QNLIPNSNKT 120 NKALMLDEAI EYLKQLQLQE QGFIATLYYV EECEILTQNE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G180800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147727 | 6e-55 | BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624907.1 | 1e-115 | transcription factor NAI1 isoform X1 | ||||
TrEMBL | K7MMB3 | 1e-113 | K7MMB3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G21573.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36497 | 2 | 2 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 2e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G180800.1.p |
Entrez Gene | 100815521 |