PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G168900.1.p
Common NameGLYMA_17G168900, LOC100788748
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 333aa    MW: 36153.7 Da    PI: 10.084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G168900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31261318359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Glyma.17G168900.1.p 261 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHT 318
                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.2E-18212257IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.7E-33247318IPR003657WRKY domain
PROSITE profilePS5081131.181254320IPR003657WRKY domain
SuperFamilySSF1182907.32E-27256319IPR003657WRKY domain
SMARTSM007746.8E-38259319IPR003657WRKY domain
PfamPF031065.9E-27261317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAVDLMTTGY TRNDNISSFT TKAEENAVQE AASGLESVEK LIRLLSQTQA QAQAHHQFNN  60
NNSSSNEIAI AMDCKAVADV AVSKFQKVIS LLGRTRTGHA RFRRAPLPNQ HQHTQPPSEP  120
PVLHATPLHQ IPPPSLHQIP KTEKHLNDSS SKTLHFSYPS AVTSFVSSLT GDAADNKQPS  180
PAATTTTSHF QITSLSHVSS AGKPPLSSSS FKRKCSSENL GSGKCGSSSS RCHCSKKRKM  240
RLKRVVRVPA ISLKMADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA  300
LDDPAMLVVT YEGEHNHTVS AADATNLILE SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-212563211478Probable WRKY transcription factor 4
2lex_A4e-212563211478Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.375540.0cotyledon| hypocotyl| leaf| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G168900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753560.0EU375356.1 Glycine max transcription factor (WRKY11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550044.10.0probable WRKY transcription factor 15
RefseqXP_028210965.10.0probable WRKY transcription factor 15
SwissprotO221764e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0R0FEJ50.0A0A0R0FEJ5_SOYBN; Uncharacterized protein
TrEMBLA0A445G7R40.0A0A445G7R4_GLYSO; Putative WRKY transcription factor 15
STRINGGLYMA17G18480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.17e-64WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]