PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G116700.1.p | ||||||||
Common Name | GLYMA_17G116700, LOC100793865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 38877.7 Da PI: 8.3553 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 84 | 108 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f+ G C+ G++C+FaHg Glyma.17G116700.1.p 84 FKTRICAKFRV-GACRNGENCNFAHG 108 69*********.*************9 PP | |||||||
2 | zf-CCCH | 27.5 | 5.5e-09 | 146 | 169 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ ++ + +C+yGd+C+F H Glyma.17G116700.1.p 146 KMKLCKKYYNGEECPYGDKCSFLH 169 789*******66************ PP | |||||||
3 | zf-CCCH | 42 | 1.5e-13 | 228 | 254 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC f tG+C++Gd C+FaHg+ Glyma.17G116700.1.p 228 WKTKLCIKFETTGHCPFGDDCHFAHGQ 254 8************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-13 | 80 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-8 | 81 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 83 | 109 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-7 | 84 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-7 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.901 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-9 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 146 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-17 | 223 | 259 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-10 | 226 | 258 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-11 | 228 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MSFSDHIPSF MMSPPSFSTD TDAIEVRLQF PMNNESLEPH SPQDRPPSFK RARTCDNSLS 60 NAMACPPRMI QHPAVNKGTS HIFFKTRICA KFRVGACRNG ENCNFAHGLE DMRQPPPNWQ 120 ELVGLRGEER PPMAGDWDDD QKIIHKMKLC KKYYNGEECP YGDKCSFLHE DPARFRDDSV 180 RYRESTSISI GTNGSPKSYG DASNNLESNR AVNTGLNVFR GNVKSTYWKT KLCIKFETTG 240 HCPFGDDCHF AHGQAELQVP GGRTEAETAG VNPISTKATI PTLPRATSVS SNDAPPSHRA 300 SVPPANEKER DKKYLLKWKG HKKINRIYGD WLDDLPLVHN LPGRVGT* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.35218 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G116700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550830.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_028210088.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q9LT81 | 9e-96 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A445G5I1 | 0.0 | A0A445G5I1_GLYSO; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | K7ML63 | 0.0 | K7ML63_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G12560.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 | Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-87 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G116700.1.p |
Entrez Gene | 100793865 |