PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G100400.1.p

Common Name

GLYMA_17G100400, LOC100810700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 278aa MW: 32117.1 Da PI: 4.9349

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G100400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.4	3.8e-25	146	194	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s +++s+yF++pi +AA eL+v+ T+LK++CR+ GI+RWPhRk+ sl Glyma.17G100400.1.p 146 TLSRKTISQYFYMPISQAATELNVGITLLKKRCREVGIRRWPHRKLMSL 194 7899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	126	214	IPR003035	RWP-RK domain
Pfam	PF02042	9.6E-21	147	194	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MESQSLMGWS SFYEIDEKPF PFTCQFSYSG NSEVYPSLDW PYGFPIQDYY LDAVPLMDYY 60 PSDPLYETLT LATTEPTQSV QDYDFYDIKK GLSGWNEVDA VFDSQKVFLF GNNEESGGIE 120 KQMMEEDGKV NNQGREERIN NSSCRTLSRK TISQYFYMPI SQAATELNVG ITLLKKRCRE 180 VGIRRWPHRK LMSLQTLINN VQELGKEEGG ESEEKLRSAI EILEREKKVL EEMPDTELED 240 TTKRLRQACF KANYKKRKLT VTGRRKEPRS SSSSSLH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G100400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235246	0.0	AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550783.1	0.0	protein RKD1
Refseq	XP_028210682.1	0.0	protein RKD1-like
TrEMBL	K7MKW5	0.0	K7MKW5_SOYBN; Uncharacterized protein
STRING	GLYMA17G10866.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-47	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.17G100400.1.p
Entrez Gene	100810700