PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G075200.5.p
Common NameGLYMA_17G075200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 288aa    MW: 31632.3 Da    PI: 7.1263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G075200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12206251555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Glyma.17G075200.5.p 206 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 251
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF098061.2E-5158269IPR019187Cyclin-dependent kinase 2-associated protein
CDDcd000837.15E-14199255No hitNo description
SuperFamilySSF474592.62E-17199261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-17203260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9206251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQPCSREMQG PNTTNSLFNN NTTCSNQPQI HFDTTSNDDF LKQMLSNLPS SSWTLDQTTP  60
DNNVVFPYDV EHANLASKFR NHQITTDNDK ASALMLHHHL LLSSSAAAAN SQLLHMPFDS  120
SAPNDVVDAP SFKSLTPNGE PASVQALYNG FSGSLQPNNQ THHFQQHPQP QVQVQSFGAS  180
APANGGGSGQ PKQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML  240
DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVAEVYYTIF FNFNTMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.166660.0epicotyl| leaf| pod| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G075200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625615.10.0transcription factor bHLH69 isoform X2
TrEMBLA0A0R0FKY10.0A0A0R0FKY1_SOYBN; Uncharacterized protein
STRINGGLYMA17G08300.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-29LJRHL1-like 1