PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G055200.2.p
Common NameGLYMA_17G055200, LOC100810698
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 311aa    MW: 34842 Da    PI: 9.9926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G055200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19172205134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Glyma.17G055200.2.p 172 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 205
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.23E-13164206No hitNo description
SMARTSM004016.7E-21166217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.782166202IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-16170205IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-15171203No hitNo description
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17172205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPLDLNEDQN HEFFSPTHHP SSSFSSLSSY PILFNPPNQD QEARSYYWEP TKQYLPSHEE  60
ETEKIIPSSG SWDHSVAESE HNKATVWKKA EERNENLESV AAEDGSLKWM PAKMRIMRKM  120
LVSDQTDTYT NSDNNTTHKF DDQKQQLSSP LGTDNSSSNN YSNHSNNTVR VCSDCHTTKT  180
PLWRSGPRGP KSLCNACGIR QRKARRAMAA AAASASGNGT VIVEAKKSVK GRNKLQKKKE  240
KKTRTEGAAQ MKKKRKLGVG SAKASQSRNK FGFEDLTLRL RKNLAMHQVF PQDEKEAAIL  300
LMALSYGLVH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236255KKKEKKTRTEGAAQMKKKRK
2251256KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.165990.0cotyledon| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G055200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550634.10.0GATA transcription factor 21 isoform X1
RefseqXP_028209244.10.0GATA transcription factor 21-like isoform X1
TrEMBLA0A445G2E70.0A0A445G2E7_GLYSO; Putative GATA transcription factor 22
TrEMBLI1MSH40.0I1MSH4_SOYBN; Uncharacterized protein
STRINGGLYMA17G06290.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-32cytokinin-responsive gata factor 1