PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G047100.1.p
Common NameGLYMA_17G047100, LOC100816054
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1137aa    MW: 127058 Da    PI: 6.4734
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G047100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Glyma.17G047100.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIlppldySMQPPA-QELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI- 213
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.17G047100.1.p 214 -RDEKQHLLLGIRRA 227
                          .5689999****997 PP
2Auxin_resp119.42.8e-39252334183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  r ++Gt++g+sdldpvrW+ S+Wr+++
  Glyma.17G047100.1.p 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRGYMGTITGISDLDPVRWKSSQWRNIQ 334
                          79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-18125226No hitNo description
SMARTSM010194.9E-22126228IPR003340B3 DNA binding domain
PfamPF023621.2E-20126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012126228IPR003340B3 DNA binding domain
PfamPF065072.3E-34252334IPR010525Auxin response factor
PfamPF023091.1E-810051094IPR033389AUX/IAA domain
PROSITE profilePS5174524.69210081101IPR000270PB1 domain
SuperFamilySSF542772.01E-810211086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MKAPSNGYLP NSGEGERKTM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDIGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK ILPPLDYSMQ PPAQELVAKD LHDNTWAFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRGY MGTITGISDL DPVRWKSSQW RNIQVGWDES TAGERPRRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMP DDESDMENAF KRAVPWLGDD FGMKDASSSI FPGFSLMQWM  420
SMQQNNQLSA AQSGCFPSML SSNTLQGNLS TDDPSKLLSF QAPVLSTPSL QLNKPNLPNQ  480
INQLQQSPVS WPQQQQLQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQLQSLLQ IPMNQLQQQR  540
QQQLPEPQNL PLLQQLPQHL GQQPQKQQQS SQHATIMNNG VVASNQITNQ FAQQPMAYGQ  600
LQQQQLLSGG IQPQQGIQSA TKNTFPLTSL PQDSQFQQQI DQQASLLQRQ QQQQQTQLQQ  660
SPLQLLQQNL PQRALQQPPA TQMLQQNPSE QQLHLQLLQK LQQQQQQQLL STSTPLLQSQ  720
LLQQQNTHQQ NQQSLQPLLP ISQHQPQQLG NNAFSTEKLL NSNNFSSSLT QSQQLSMNQP  780
QNTQKSHTIT RAPSTLTDGD APSCSTSPST NNCQVSPPNL LKRNQQIPAT LGGGLIVEPT  840
SNLIQELHSK PDTQIKQELL NVKGPDQLKY KGTITDPLEA SSSGTSYCLD PGNVQQNLPL  900
SNFCMERDVQ SHPRNSLPFD SNLDGLTPDT MLLRGYDSQK DLQNLLSNYA SAPRDIETEL  960
STADISSQSF GVPNMPFKPG CSSDVGINDT GVLNNNNGLR TNQTPRMRTY TKVQKRGSVG  1020
RCIDVTRYKG YDELRHDLAR MFGIEGQLED PLRTDWKLVY VDHENDILLV GDDPWDEFVS  1080
CVQSIKILSS AEVQQMSLDG DLGGNVPIPN QACSGTDSGN AWRGQYEDNS AASFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.378750.0hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G047100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551063.10.0auxin response factor 19
TrEMBLI1MS550.0I1MS55_SOYBN; Auxin response factor
STRINGGLYMA17G05220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Representative plantOGRP9033914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19