PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G200700.1.p
Common NameGLYMA_16G200700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27566 Da    PI: 9.0616
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G200700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.2e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +rienk+nrqvtfskRr g+lKKA+ELSvLCdaeva+iifss+gkl+ yss
  Glyma.16G200700.1.p  9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSS 59
                         69***********************************************96 PP
2K-box69.31.2e-2374172199
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y ks++ +  e++++s+++e+ kL++++e+L+ +qRh++Ge+Le+Ls+k+Lq+Le+qL+  l   R+++++ ll+  +el++k ++l++ 
  Glyma.16G200700.1.p  74 YSKSQTDDSLEHDSQSSYHEFLKLRAKYESLELTQRHFQGEELEPLSFKDLQSLEKQLDITLALTRQHQTKKLLARADELREKVHKLEDL 163
                          56778888889999**************************************************************************** PP

                K-box  91 nkaLrkkle 99 
                          nk+L++k +
  Glyma.16G200700.1.p 164 NKQLESKEK 172
                          ****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.539161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-32276IPR002100Transcription factor, MADS-box
CDDcd002655.43E-40275No hitNo description
PRINTSPR004043.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1884170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.95187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSS RGKLFQYSST  60
DINKIIERYR QCRYSKSQTD DSLEHDSQSS YHEFLKLRAK YESLELTQRH FQGEELEPLS  120
FKDLQSLEKQ LDITLALTRQ HQTKKLLARA DELREKVHKL EDLNKQLESK EKDEFSSFIL  180
DNNNYIQVHA TQGDQFESGT TLNTCRFQRQ DSKEKAIDTK TDGSQSSHNK NKGWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-24169169MEF2C
5f28_B2e-24169169MEF2C
5f28_C2e-24169169MEF2C
5f28_D2e-24169169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G200700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936810.0BT093681.1 Soybean clone JCVI-FLGm-14A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206138.11e-172truncated transcription factor CAULIFLOWER D-like isoform X1
SwissprotQ8LLR13e-66MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0B2RGU61e-171A0A0B2RGU6_GLYSO; MADS-box transcription factor 6
TrEMBLI1MQ501e-171I1MQ50_SOYBN; Uncharacterized protein
STRINGGLYMA16G32540.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-61AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]