PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G199300.2.p
Common NameGLYMA_16G199300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 375aa    MW: 40503.6 Da    PI: 7.4031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G199300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-09103123425
                          ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          + C+++ + G C+yG+rCkF H
  Glyma.16G199300.2.p 103 KVCNYWIQ-GNCSYGERCKFLH 123
                          68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.3381844IPR000571Zinc finger, CCCH-type
SMARTSM003560.212043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202100126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7101124IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6101125IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6103123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-7103123IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.19E-41121352IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.8E-18124240IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-6130169IPR001680WD40 repeat
PfamPF004008.3E-5133169IPR001680WD40 repeat
PROSITE profilePS5008214.652137178IPR001680WD40 repeat
PROSITE profilePS5029422.623137339IPR017986WD40-repeat-containing domain
PRINTSPR003201.6E-6156170IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780156170IPR019775WD40 repeat, conserved site
SMARTSM003203.4209246IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.1E-22241355IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.7E-4253290IPR001680WD40 repeat
PfamPF004009.9E-4257290IPR001680WD40 repeat
PROSITE profilePS5008213.249260299IPR001680WD40 repeat
PRINTSPR003201.6E-6277291IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780277291IPR019775WD40 repeat, conserved site
SMARTSM003201.6E-4293330IPR001680WD40 repeat
PfamPF004000.0012295329IPR001680WD40 repeat
PRINTSPR003201.6E-6317331IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDVDGGNKRV YNRLGGDAKH QKVCFHWQAG KCNRYPCPFL HSELPANSHH ANGASSKRAY  60
DNSGFSGPRR SPSFNNTWGR GGSRGGGGAG AGAGRGVVVK AEKVCNYWIQ GNCSYGERCK  120
FLHTWSVGDG FSLLTQLEGH QKAVSAIAFP SGSDKLYTGS TDETARIWDC QSGKCVGVIN  180
LGGEVGCMIS EGPWVFVGIP NFVKAWNTQN LSELSLNGPV GQVYALVVNN DMLFAGTQDG  240
SILAWKFNVA TNCFEPAASL KGHSRGVVSL VVGANRLYSG SMDNTIRVWN LETLQCLQTL  300
TEHTSVVMSV LCWDQFLLSC SLDKTVKVWY ATESGNLEVT YTHNEENVEM MFSQNCVESI  360
LTSAINVPAT TLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-241163595323Tako8
6g6n_A9e-241163595323Tako8
6g6n_B9e-241163595323Tako8
6g6n_C9e-241163595323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241680.0cotyledon| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G199300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-79AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548225.10.0zinc finger CCCH domain-containing protein 48 isoform X1
RefseqXP_028207997.10.0zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ21e-173C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0R0FST10.0A0A0R0FST1_SOYBN; Uncharacterized protein
STRINGGLYMA16G32370.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-160zinc finger WD40 repeat protein 1