PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G181700.2.p
Common NameGLYMA_16G181700, LOC100809067
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 691aa    MW: 76936.3 Da    PI: 8.0274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G181700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0581102223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          kC +C++ F ++ n++rHir+H
  Glyma.16G181700.2.p  81 KCDKCSREFCSPVNYRRHIRVH 102
                          7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.008980102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24280107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MPIAKLKASG TPDVMKTEDR IDTLIRQAIG KEPFIPFPRA SESPVQWIQL LHALDPQGVS  60
NTFSEFPGWP LFSPLKVQLQ KCDKCSREFC SPVNYRRHIR VHHRLKKLDK DFTKTKDLLG  120
AYWDKLSVEE AKEVVSFENV LLEEVPASSI LKSLTTFIQN QGFYSFPQYY LMAGAALLDI  180
VQSKPSCFPI SSQELFSILD DASENTCLCG TAESMQRYVF DGEAGKIGLE PKNLVACTSF  240
LLEQKLVKAW LADKDAEALR CQKQLVEEEE AAQKRQAEIL ERKRQKKLRQ KEQKAREQRH  300
QAEAEIKGDI DSTVKALSPA EASLDTYNFE AHNPSTFSDN AASPVPFQCP DTSEEINGDI  360
HSESETITDQ DIVRQSAHGH KHKRQAVARQ QGLPKLQWAV ANGLHTKQNS PVSKLEINQK  420
YGTHCDQKAS SIVNGSKVWT RKSKTEIDKV VLKTIKEKEP DQVKNQEVLI GSISVNLSNC  480
SQSEGNMVAS QKDFIVENMG KQNISRDKPM KTDLAMGDNN RSTVKFWRPV SRLETKDPLP  540
VQSGGTKVDA VHENGQNLSG PSSLRVCTAA GGDIGFAKYF SHTEDKADPG SFWFDIQAAK  600
AFLAQRWKEA ISSEHVTLVI CPDSEPPGCE EIQDLKTAAC QSSDMDGCDI VANADKRLPA  660
TSKVAKSKPR LKKSEKGTKI KYIPKQKTNT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280287ERKRQKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.8560.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G181700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599567.10.0uncharacterized protein LOC100809067
RefseqXP_028207759.10.0uncharacterized protein LOC114390984
TrEMBLA0A0B2PJK00.0A0A0B2PJK0_GLYSO; Uncharacterized protein
TrEMBLK7MI400.0K7MI40_SOYBN; Uncharacterized protein
STRINGGLYMA16G30100.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein