PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G181700.1.p
Common NameGLYMA_16G181700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 723aa    MW: 80496.7 Da    PI: 8.2557
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G181700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05113134223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          kC +C++ F ++ n++rHir+H
  Glyma.16G181700.1.p 113 KCDKCSREFCSPVNYRRHIRVH 134
                          7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.242112139IPR007087Zinc finger, C2H2
SMARTSM003550.0089112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MLWKIAVKCR LCSHNCSCGS LVKLLGKLLC EQMPIAKLKA SGTPDVMKTE DRIDTLIRQA  60
IGKEPFIPFP RASESPVQWI QLLHALDPQG VSNTFSEFPG WPLFSPLKVQ LQKCDKCSRE  120
FCSPVNYRRH IRVHHRLKKL DKDFTKTKDL LGAYWDKLSV EEAKEVVSFE NVLLEEVPAS  180
SILKSLTTFI QNQGFYSFPQ YYLMAGAALL DIVQSKPSCF PISSQELFSI LDDASENTCL  240
CGTAESMQRY VFDGEAGKIG LEPKNLVACT SFLLEQKLVK AWLADKDAEA LRCQKQLVEE  300
EEAAQKRQAE ILERKRQKKL RQKEQKAREQ RHQAEAEIKG DIDSTVKALS PAEASLDTYN  360
FEAHNPSTFS DNAASPVPFQ CPDTSEEING DIHSESETIT DQDIVRQSAH GHKHKRQAVA  420
RQQGLPKLQW AVANGLHTKQ NSPVSKLEIN QKYGTHCDQK ASSIVNGSKV WTRKSKTEID  480
KVVLKTIKEK EPDQVKNQEV LIGSISVNLS NCSQSEGNMV ASQKDFIVEN MGKQNISRDK  540
PMKTDLAMGD NNRSTVKFWR PVSRLETKDP LPVQSGGTKV DAVHENGQNL SGPSSLRVCT  600
AAGGDIGFAK YFSHTEDKAD PGSFWFDIQA AKAFLAQRWK EAISSEHVTL VICPDSEPPG  660
CEEIQDLKTA ACQSSDMDGC DIVANADKRL PATSKVAKSK PRLKKSEKGT KIKYIPKQKT  720
NT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312319ERKRQKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.8560.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G181700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599567.10.0uncharacterized protein LOC100809067
RefseqXP_028207759.10.0uncharacterized protein LOC114390984
TrEMBLA0A0R0G1P40.0A0A0R0G1P4_SOYBN; Uncharacterized protein
STRINGGLYMA16G30100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-123C2H2-like zinc finger protein