PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G167700.1.p

Common Name

GLYMA_16G167700, LOC100805861

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 444aa MW: 51468.2 Da PI: 9.6013

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G167700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.7	1.6e-23	118	213	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li + ++++e+ ++ ++k++W+++sk+m+erg+++sp+qC++k+++l+k ykk++ + +++ +++++++ Glyma.16G167700.1.p 118 KWTDKMVKLLIMVMSYIGEDATFDNsskrrkftvlQNKGKWKSISKVMAERGYHVSPQQCEDKFNDLSKSYKKLNVMLGRGtSCRVVENP 207 7************99998887655677889999********************************************568999888 PP trihelix 80 pyfdql 85 +++d + Glyma.16G167700.1.p 208 SLLDLI 213 887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-21	117	240	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MEGKLSKRGM LQGRGRFGGS DLPRSMRVRR KEKHPHSMNQ QHIHHCQRSL VHSSIHDGLP 60 LTMGSFQKCD HQILSMTEFN QRGIHKTSPS DASLVEECVD GHHEAGKGKK STPWQQVKWT 120 DKMVKLLIMV MSYIGEDATF DNSSKRRKFT VLQNKGKWKS ISKVMAERGY HVSPQQCEDK 180 FNDLSKSYKK LNVMLGRGTS CRVVENPSLL DLIDYLSEKE KDHVRKILSS KHLFYEEMCS 240 YHNGNRLHLP HDPTLQQSLQ AALQNRDDHD SDDIRRSHHY DYDKDDIDME SSDQDDFEEN 300 YASLANSRGV YGATRQPLKR LKTGQGQVDV ATFGSALNSR EYNKSSYSPV VQSDGNQDFL 360 PKMRAAWLQK QSVESRSLQL EEQKLQIQDE MLELKKQRFK WQKFSRKKDL ELEKLKLENE 420 RMKIENERIA LKLKRQEISA NFN*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MEGKLSKRGM LQGRGRFGGS DLPRSMRVRR KEKHPHSMNQ QHIHHCQRSL VHSSIHDGLP  60
LTMGSFQKCD HQILSMTEFN QRGIHKTSPS DASLVEECVD GHHEAGKGKK STPWQQVKWT  120
DKMVKLLIMV MSYIGEDATF DNSSKRRKFT VLQNKGKWKS ISKVMAERGY HVSPQQCEDK  180
FNDLSKSYKK LNVMLGRGTS CRVVENPSLL DLIDYLSEKE KDHVRKILSS KHLFYEEMCS  240
YHNGNRLHLP HDPTLQQSLQ AALQNRDDHD SDDIRRSHHY DYDKDDIDME SSDQDDFEEN  300
YASLANSRGV YGATRQPLKR LKTGQGQVDV ATFGSALNSR EYNKSSYSPV VQSDGNQDFL  360
PKMRAAWLQK QSVESRSLQL EEQKLQIQDE MLELKKQRFK WQKFSRKKDL ELEKLKLENE  420
RMKIENERIA LKLKRQEISA NFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	407	KQRFKWQKFSRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G167700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548116.1	0.0	uncharacterized protein LOC100805861
TrEMBL	I1MP74	0.0	I1MP74_SOYBN; Uncharacterized protein
STRING	GLYMA16G28270.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-134	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Glyma.16G167700.1.p
Entrez Gene	100805861