PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G102000.1.p | ||||||||
Common Name | GLYMA_16G102000, LOC102667003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 414aa MW: 45168.6 Da PI: 8.0811 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F + L H+r H Glyma.16G102000.1.p 37 WVCHICKKGFGSGKALGGHMRIH 59 58*******************99 PP | |||||||
2 | zf-C2H2 | 18.3 | 6.2e-06 | 93 | 114 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksFs+ +L H+r+H Glyma.16G102000.1.p 93 TCSLCGKSFSSMKSLFGHLRSH 114 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.3E-8 | 36 | 59 | No hit | No description |
SMART | SM00355 | 0.056 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.1E-7 | 38 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.3E-8 | 87 | 114 | No hit | No description |
SMART | SM00355 | 0.013 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.575 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 93 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-7 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 8.5E-4 | 257 | 277 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MEKDQEAQHH RENQGSLVTT VKVEGSEAVN NNEHRSWVCH ICKKGFGSGK ALGGHMRIHN 60 LSKKQQVHRA KQGTTIVAKP KTNKWVFVSG NPTCSLCGKS FSSMKSLFGH LRSHPERMRK 120 GIQNNTPSIN GASSNSTSSS TLSDDSTAVD LSQALRGCWS VSAKRGRRSP SCSKSNSGLE 180 DDGEIEPRMQ EAVYNLMLLA SGNPKREEEL DGDQIEEKKL LNPVFGDSDE MKRDRKRVTK 240 KMKLTELEAA EEGDKLCRIC NTTFPSPQVL EGHLCSSKIF KNIQVMDESE SDGVLATKEE 300 HHAKKPTMQG EETTVLGGNA VEAIRGYHCK IFIKTFSTGQ VFGDHKISNW TSTAEAQSSA 360 QATSSPVGNA QNCSKILTFD LNQLPAMDGQ DGVQSDLFIP ANIVTSFSYG SSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G102000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006599222.1 | 0.0 | zinc finger protein ZAT1 | ||||
Refseq | XP_028206665.1 | 0.0 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A0B2SSB4 | 0.0 | A0A0B2SSB4_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1MML8 | 0.0 | I1MML8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G18060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 | Representative plant | OGRP7061 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 2e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G102000.1.p |
Entrez Gene | 102667003 |