PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.16G079600.1.p | ||||||||
Common Name | GLYMA_16G079600, LOC100779645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 31013.8 Da PI: 4.7244 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7e-20 | 108 | 158 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +grW+AeIrdp r +r++lg+f+taeeAa +++a+ k++g+ Glyma.16G079600.1.p 108 KFRGVRQRP-WGRWAAEIRDPL----RrTRVWLGTFDTAEEAAMVYDKAAIKFRGA 158 89*******.**********73....45*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-22 | 108 | 164 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-37 | 108 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 108 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.683 | 108 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.64E-35 | 108 | 164 | No hit | No description |
Pfam | PF00847 | 3.9E-13 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MECARKTITT KFMKSSKFFP KVVRISVTDQ DATDSSSDEE AERVKVKKIV VNEIVCVNNN 60 KKRHNNDNSG CCYSTKDNES LKQQRQQSLV SLGEEGYMDS KQSLKQHKFR GVRQRPWGRW 120 AAEIRDPLRR TRVWLGTFDT AEEAAMVYDK AAIKFRGAEA VTNFIKPPLK DDAVSLEICE 180 SVVSGTSCAC DSPTSVLVFQ PWMEPPLLEE TFKEVFSGLT DGYDDGFLFS NDSLCDQPLP 240 TTFSNADCII PLDEDFESCK WVVDNYFSDD TSLQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 105 | 170 | 2 | 65 | ATERF1 |
3gcc_A | 3e-22 | 105 | 170 | 2 | 65 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.16G079600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548602.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | K7MFU3 | 0.0 | K7MFU3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G08683.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-35 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.16G079600.1.p |
Entrez Gene | 100779645 |