PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G042300.1.p
Common NameGLYMA_16G042300, LOC100812088
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 282aa    MW: 31474.7 Da    PI: 6.6509
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G042300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17209243135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Glyma.16G042300.1.p 209 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 243
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.147203239IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-14203257IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15204267No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13207241IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.37E-12208255No hitNo description
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PfamPF003205.4E-15209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNMDMCQNVS VSGECQQVQV FAPSCSSSLD DLFSAQNTEV DVELEWLSEF VEDCFSSPPS  60
CVLVPVGVKT TSTKSTSTSI NPSLKRPQQQ NEPPLQNFAV PGKARSKRKR LSAPRTNKDP  120
LSIWSHHLNP QNEALCSDPP LLKQAYWLAD SELIMPKPKD KEEQQEEVVI MAKEDEEKVI  180
INVSKEISFG DSELDEGSNG QQQPMPRRCT HCLAQRTPQW RAGPLGPKTL CNACGVRYKS  240
GRLLPEYRPA KSPTFVSYLH SNSHKKVMEM RMSVYSISSE Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.459180.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G042300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935010.0BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548758.10.0GATA transcription factor 9
RefseqXP_028205780.10.0GATA transcription factor 9-like
TrEMBLA0A445GED70.0A0A445GED7_GLYSO; GATA transcription factor 9
TrEMBLK7MF590.0K7MF59_SOYBN; Uncharacterized protein
STRINGGLYMA16G04670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-43GATA transcription factor 9