PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G031900.1.p
Common NameGLYMA_16G031900, Glyma16g03570.1, LOC100815829
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 336aa    MW: 36363.9 Da    PI: 6.4347
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G031900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31158216259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+geHnh+
  Glyma.16G031900.1.p 158 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPAMFIVTYTGEHNHP 216
                          79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31147218IPR003657WRKY domain
PROSITE profilePS5081135.634152218IPR003657WRKY domain
SuperFamilySSF1182907.45E-27153218IPR003657WRKY domain
SMARTSM007742.4E-38157217IPR003657WRKY domain
PfamPF031061.8E-26159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEADWDLHAV VRGCTTTTSS AATTTTNSSS VSSSGFGACN PPSTSSCFFS VYNPAEQGGH  60
VLSLSENPFE ARSSNSIEGL HELCKPFFLK PQPQTLQTSS PLSSFSYSST PKSPHKQQEQ  120
KQSQPQFHHA GSATTPRSKR RKNQLKKVCQ VAAENLSSDI WAWRKYGQKP IKGSPYPRGY  180
YRCSSSKGCL ARKQVERNRS DPAMFIVTYT GEHNHPAPTH KNSLAGSTRH KPQTATAEDA  240
ATIKPASPST SGMEEEVAQH SAKSESTEEE DMEDLMKNDE ELPNEFGLTE TVVSDDFFEG  300
LEELTGSATD PFTAISSNID RWPLANNSAT AAGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21143219380Disease resistance protein RRS1
5w3x_D2e-21143219380Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.244360.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G031900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312400.0KT031240.1 Glycine max clone HN_CCL_164 WRKY transcription factor (Glyma16g03570.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548638.10.0WRKY transcription factor 22
TrEMBLI1MKR80.0I1MKR8_SOYBN; WRKY transcription factor
STRINGGLYMA16G03570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-73WRKY family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]