PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G021000.1.p
Common NameGlyma16g02390.1, LOC100811208
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28334.3 Da    PI: 4.8783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G021000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-183889556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++f++eq++ Le++Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Glyma.16G021000.1.p 38 RRFSDEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 89
                         58*************************************************9 PP
2HD-ZIP_I/II118.82.9e-3837127393
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                           rr+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ e+L+ke+++L  +l+
  Glyma.16G021000.1.p  37 TRRFSDEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNTLASRFEALKKEKQTLLIQLQ 126
                          79***********************************************************************************99988 PP

          HD-ZIP_I/II  93 e 93 
                          +
  Glyma.16G021000.1.p 127 K 127
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.47E-182193IPR009057Homeodomain-like
SMARTSM003891.5E-142895IPR001356Homeobox domain
PROSITE profilePS5007117.3463191IPR001356Homeobox domain
CDDcd000863.74E-143892No hitNo description
PfamPF000463.3E-163889IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-193898IPR009057Homeodomain-like
PRINTSPR000311.0E-56271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000311.0E-57187IPR000047Helix-turn-helix motif
PfamPF021832.8E-1691133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEYSQYTTYS AEGVEAETYT SSCTTPSRSK KRNNNNTRRF SDEQIKSLET MFESETRLEP  60
RKKLQLAREL GLQPRQVAIW FQNKRARWKS KQLERDYGIL QSNYNTLASR FEALKKEKQT  120
LLIQLQKLNH LMQKPMEPSQ RCTQVEAANS MDSESENGGT MKCKAEGKPS PSSLERSEHV  180
LGVLSDDDTS IKVEDFNLED EHGLLNFVEH ADGSLTSPED WSAFESNDLF GQSTTDDYQW  240
WDFWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.614400.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G021000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311760.0KT031176.1 Glycine max clone HN_WYQ_5 homeodomain/HOMEOBOX transcription factor (Glyma16g02390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548207.20.0homeobox-leucine zipper protein ATHB-12
SwissprotP468971e-62ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0K2CTR10.0A0A0K2CTR1_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLI1MKF30.0I1MKF3_SOYBN; Uncharacterized protein
STRINGGLYMA16G02390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-63homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]